hPDI: a database of experimental human protein-DNA interactions. - Zhi Xie; Shaohui Hu; Seth Blackshaw; Heng Zhu; Jiang Qian (Bioinform., 2010)

Assessing the model transferability for prediction of transcription factor binding sites based on chromatin accessibility. - Sheng Liu; Cristina Zibetti; Jun Wan 002; Guohua Wang; Seth Blackshaw; Jiang Qian (BMC Bioinform., 2017)

PanoView: An iterative clustering method for single-cell RNA sequencing data. - Ming-Wen Hu; Dong Won Kim; Sheng Liu; Donald J. Zack; Seth Blackshaw; Jiang Qian (PLoS Comput. Biol., 2019)

LRLoop: a method to predict feedback loops in cell-cell communication. - Ying Xin; Pin Lyu; Junyao Jiang; Fengquan Zhou; Jie Wang 066; Seth Blackshaw; Jiang Qian (Bioinform., 2022)