Gröbner Bases and Polyhedral Geometry of Reducible and Cyclic Models. - Serkan Hosten; Seth Sullivant (J. Comb. Theory A, 2002)

A Divide-and-Conquer Algorithm for Generating Markov Bases of Multi-way Tables. - Adrian Dobra; Seth Sullivant (Comput. Stat., 2004)

Toric Ideals of Phylogenetic Invariants. - Bernd Sturmfels; Seth Sullivant (J. Comput. Biol., 2005)

Small Contingency Tables with Large Gaps. - Seth Sullivant (SIAM J. Discret. Math., 2005)

Polyhedral conditions for the nonexistence of the MLE for hierarchical log-linear models. - Nicholas Eriksson; Stephen E. Fienberg; Alessandro Rinaldo; Seth Sullivant (J. Symb. Comput., 2006)

The space of compatible full conditionals is a unimodular toric variety. - Aleksandra B. Slavkovic; Seth Sullivant (J. Symb. Comput., 2006)

A finiteness theorem for Markov bases of hierarchical models. - Serkan Hosten; Seth Sullivant (J. Comb. Theory A, 2007)

Algebraic geometry of Gaussian Bayesian networks. - Seth Sullivant (Adv. Appl. Math., 2008)

Identifying Causal Effects with Computer Algebra. - Luis Garcia; Sarah Spielvogel; Seth Sullivant (UAI, 2010)

Eulerian-Catalan Numbers. - Hoda Bidkhori; Seth Sullivant (Electron. J. Comb., 2011)

Identifiability of Two-Tree Mixtures for Group-Based Models. - Elizabeth S. Allman; Sonja Petrovic; John A. Rhodes; Seth Sullivant (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Algebraic statistics. - Seth Sullivant (ISSAC, 2012)

Geodesics in CAT(0) cubical complexes. - Federico Ardila; Megan Owen; Seth Sullivant (Adv. Appl. Math., 2012)

The Disentangling Number for Phylogenetic Mixtures. - Seth Sullivant (SIAM J. Discret. Math., 2012)

Polyhedral combinatorics of UPGMA cones. - Ruth Davidson; Seth Sullivant (Adv. Appl. Math., 2013)

Positivity for Gaussian graphical models. - Jan Draisma; Seth Sullivant; Kelli Talaska (Adv. Appl. Math., 2013)

Identifiable reparametrizations of linear compartment models. - Nicolette Meshkat; Seth Sullivant (J. Symb. Comput., 2014)

Distance-Based Phylogenetic MethodsAround a Polytomy. - Ruth Davidson; Seth Sullivant (IEEE ACM Trans. Comput. Biol. Bioinform., 2014)

Identifiability of 3-class Jukes-Cantor mixtures. - Colby Long; Seth Sullivant (Adv. Appl. Math., 2015)

Bounds on the Expected Size of the Maximum Agreement Subtree. - Daniel Irving Bernstein; Lam Si Tung Ho; Colby Long; Mike A. Steel; Katherine St. John; Seth Sullivant (SIAM J. Discret. Math., 2015)

Lifting Markov bases and higher codimension toric fiber products. - Johannes Rauh; Seth Sullivant (J. Symb. Comput., 2016)

Normal Binary Hierarchical Models. - Daniel Irving Bernstein; Seth Sullivant (Exp. Math., 2017)

Statistically Consistent k-mer Methods for Phylogenetic Tree Reconstruction. - Elizabeth S. Allman; John A. Rhodes; Seth Sullivant (J. Comput. Biol., 2017)

Unimodular binary hierarchical models. - Daniel Irving Bernstein; Seth Sullivant (J. Comb. Theory B, 2017)

Bounds on the Expected Size of the Maximum Agreement Subtree for a Given Tree Shape. - Pratik Misra; Seth Sullivant (SIAM J. Discret. Math., 2019)

Markov equivalence of max-linear Bayesian networks. - Carlos Améndola; Benjamin Hollering; Seth Sullivant; Ngoc Tran (UAI, 2021)

Toric geometry of the Cavender-Farris-Neyman model with a molecular clock. - Jane Ivy Coons; Seth Sullivant (Adv. Appl. Math., 2021)

Quasi-independence models with rational maximum likelihood estimator. - Jane Ivy Coons; Seth Sullivant (J. Symb. Comput., 2021)

Identifiability in phylogenetics using algebraic matroids. - Benjamin Hollering; Seth Sullivant (J. Symb. Comput., 2021)

Directed Gaussian graphical models with toric vanishing ideals. - Pratik Misra; Seth Sullivant (Adv. Appl. Math., 2022)

Exchangeable and sampling-consistent distributions on rooted binary trees. - Benjamin Hollering; Seth Sullivant (J. Appl. Probab., 2022)

Structural identifiability of series-parallel LCR systems. - Cashous Bortner; Seth Sullivant (J. Symb. Comput., 2022)

Identifiability of linear compartmental tree models and a general formula for input-output equations. - Cashous Bortner; Elizabeth Gross; Nicolette Meshkat; Anne Shiu; Seth Sullivant (Adv. Appl. Math., 2023)

The $h^*$-Polynomial of the Order Polytope of the Zig-Zag Poset. - Jane Ivy Coons; Seth Sullivant (Electron. J. Comb., 2023)

On mixing behavior of a family of random walks determined by a linear recurrence. - Caprice Stanley; Seth Sullivant (Discret. Math., 2023)

Marginal Independence and Partial Set Partitions. - Francisco Ponce Carrión; Seth Sullivant (ACM Commun. Comput. Algebra, 2024)

Equidistant Circular Split Networks. - Bryson Kagy; Seth Sullivant (SIAM J. Appl. Algebra Geom., 2025)