MODi : a powerful and convenient web server for identifying multiple post-translational peptide modifications from tandem mass spectra. - Sangtae Kim; Seungjin Na; Ji Woong Sim; Heejin Park; Jaeho Jeong; Hokeun Kim; Younghwan Seo; Jawon Seo; Kong-Joo Lee; Eunok Paek (Nucleic Acids Res., 2006)

High-throughput peptide quantification using mTRAQ reagent triplex. - Joo Yoon; Jeonghun Yeom; Heebum Lee; Kyutae Kim; Seungjin Na; Kunsoo Park; Eunok Paek; Cheolju Lee (BMC Bioinform., 2011)

Deephos: predicted spectral database search for TMT-labeled phosphopeptides and its false discovery rate estimation. - Seungjin Na; Hyunjin Choi; Eunok Paek (Bioinform., 2022)

TIDD: tool-independent and data-dependent machine learning for peptide identification. - Honglan Li; Seungjin Na; Kyu-Baek Hwang; Eunok Paek (BMC Bioinform., 2022)