A method for protein accessibility prediction based on residue types and conformational states. - Roghayeh Zarei; Shahriar Arab; Mehdi Sadeghi (Comput. Biol. Chem., 2007)

A tale of two symmetrical tails: Structural and functional characteristics of palindromes in proteins. - Armita Sheari; Mehdi Kargar; Ali Katanforoush; Shahriar Arab; Mehdi Sadeghi; Hamid Pezeshk; Changiz Eslahchi; Sayed-Amir Marashi (BMC Bioinform., 2008)

STON: A novel method for protein three-dimensional structure comparison. - Changiz Eslahchi; Hamid Pezeshk; Mehdi Sadeghi; Amir Massoud Rahimi; Heydar Maboudi Afkham; Shahriar Arab (Comput. Biol. Medicine, 2009)

Overcoming drug resistance by co-targeting. - Marzieh Ayati; Golnaz Taheri; Shahriar Arab; Limsoon Wong; Changiz Eslahchi (BIBM, 2010)

A pairwise residue contact area-based mean force potential for discrimination of native protein structure. - Shahriar Arab; Mehdi Sadeghi; Changiz Eslahchi; Hamid Pezeshk; Armita Sheari (BMC Bioinform., 2010)

Inference of Gene Regulatory Networks by Extended Kalman Filtering using Gene Expression Time Series Data. - Ramouna Fouladi; Emad Fatemizadeh; Seyed Shahriar Arab (BIOINFORMATICS, 2012)

NETAL: a new graph-based method for global alignment of protein-protein interaction networks. - Behnam Neyshabur; Ahmadreza Khadem; Somaye Hashemifar; Seyed Shahriar Arab (Bioinform., 2013)

Putracer: a Novel Method for Identification of continuous-Domains in Multi-Domain proteins. - Seyed Shahriar Arab; Mohammadbagher Parsa Gharamaleki; Zaiddodine Pashandi; Rezvan Mobasseri (J. Bioinform. Comput. Biol., 2013)

MemBuilder: a web-based graphical interface to build heterogeneously mixed membrane bilayers for the GROMACS biomolecular simulation program. - Mohammad Mehdi Ghahremanpour; Seyed Shahriar Arab; Saman Biook Aghazadeh; Jin Zhang 032; David van der Spoel (Bioinform., 2014)

Evaluating the accuracy of protein design using native secondary sub-structures. - Marziyeh Movahedi; Fatemeh Zare-Mirakabad; Seyed Shahriar Arab (BMC Bioinform., 2016)

PDB2Graph: A toolbox for identifying critical amino acids map in proteins based on graph theory. - Niloofar Niknam; Hamed Khakzad; Seyed Shahriar Arab; Hossein Naderi-manesh (Comput. Biol. Medicine, 2016)

Prediction of chemoresistance trait of cancer cell lines using machine learning algorithms and systems biology analysis. - Atousa Ataei; Niloufar Seyed Majidi; Javad Zahiri; Mehrdad Rostami; Seyed Shahriar Arab; Albert Rizvanov (J. Big Data, 2021)

Protein sequence profile prediction using ProtAlbert transformer. - Armin Behjati; Fatemeh Zare-Mirakabad; Seyed Shahriar Arab; Abbas Nowzari-Dalini (Comput. Biol. Chem., 2022)

Screening of BindingDB database ligands against EGFR, HER2, Estrogen, Progesterone and NF-κB receptors based on machine learning and molecular docking. - Parham Rezaee; Shahab Rezaee; Malik Maaza; Seyed Shahriar Arab (Comput. Biol. Medicine, 2024)

Screening of BindingDB database ligands against EGFR, HER2, Estrogen, Progesterone and NF-kB receptors based on machine learning and molecular docking. - Parham Rezaee; Shahab Rezaee; Malik Maaza; Seyed Shahriar Arab (CoRR, 2024)