CUDAGRN: Parallel Speedup of Inferring Large Gene Regulatory Networks from Expression Data Using Random Forest. - Seyed Ziaeddin Alborzi; D. A. K. Maduranga; Rui Fan; Jagath C. Rajapakse; Jie Zheng 002 (PRIB, 2014)

Associating Gene Ontology Terms with Pfam Protein Domains. - Seyed Ziaeddin Alborzi; Marie-Dominique Devignes; David W. Ritchie (IWBBIO (2), 2017)

ECDomainMiner: discovering hidden associations between enzyme commission numbers and Pfam domains. - Seyed Ziaeddin Alborzi; Marie-Dominique Devignes; David W. Ritchie (BMC Bioinform., 2017)

Neighborhood-Based Label Propagation in Large Protein Graphs. - Sabeur Aridhi; Seyed Ziaeddin Alborzi; Malika Smaïl-Tabbone; Marie-Dominique Devignes; David W. Ritchie (CoRR, 2017)

Computational discovery of direct associations between GO terms and protein domains. - Seyed Ziaeddin Alborzi; David W. Ritchie; Marie-Dominique Devignes (BMC Bioinform., 2018)

Automatic Discovery of Hidden Associations Using Vector Similarity : Application to Biological Annotation Prediction. (Découverte automatique des associations cachées en utilisant la similarité vectorielle : application à la prédiction de l'annotation biologique). - Seyed Ziaeddin Alborzi (2018)

PPIDomainMiner: Inferring domain-domain interactions from multiple sources of protein-protein interactions. - Seyed Ziaeddin Alborzi; Amina Ahmed Nacer; Hiba Najjar; David W. Ritchie; Marie-Dominique Devignes (PLoS Comput. Biol., 2021)