An Analytical Review of Computational Drug Repurposing. - Seyedeh Shaghayegh Sadeghi; Mohammad Reza Keyvanpour (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

DeePSLiM: A Deep Learning Approach to Identify Predictive Short-linear Motifs for Protein Sequence Classification. - Alexandru Filip; Seyedeh Shaghayegh Sadeghi; Alioune Ngom; Luis Rueda 001 (CIBCB, 2022)

DDIPred: Graph Convolutional Network-Based Drug-drug Interactions Prediction Using Drug Chemical Structure Embedding. - Seyedeh Shaghayegh Sadeghi; Alioune Ngom (CIBCB, 2022)

A network-based drug repurposing method via non-negative matrix factorization. - Seyedeh Shaghayegh Sadeghi; Jianguo Lu; Alioune Ngom (Bioinform., 2022)

Comparative Analysis of LLaMA and ChatGPT Embeddings for Molecule Embedding. - Seyedeh Shaghayegh Sadeghi; Alan Bui; Ali Forooghi; Jianguo Lu; Alioune Ngom (CoRR, 2024)

Whitening Not Recommended for Classification Tasks in LLMs. - Ali Forooghi; Seyedeh Shaghayegh Sadeghi; Jianguo Lu (CoRR, 2024)

Representation Learning Methods for Association Prediction Tasks in Drug Discovery. - Seyedeh Shaghayegh Sadeghi (2024)

Can large language models understand molecules? - Seyedeh Shaghayegh Sadeghi; Alan Bui; Ali Forooghi; Jianguo Lu; Alioune Ngom (BMC Bioinform., 2024)