A Rule-Based Domain Specific Language for Fault Management. - Özgür Kaya; Seyedsasan Hashemikhabir; Cengiz Togay; Ali H. Dogru (Trans. SDPS, 2010)

Large-Scale Signaling Network Reconstruction. - Seyedsasan Hashemikhabir; Eyüp Serdar Ayaz; Yusuf Kavurucu; Tolga Can; Tamer Kahveci (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

Database of RNA binding protein expression and disease dynamics (READ DB). - Seyedsasan Hashemikhabir; Yaseswini Neelamraju; Sarath Chandra Janga (Database J. Biol. Databases Curation, 2015)

Health Care Needs of Underserved Populations in the City of Indianapolis. - Iman Mohammadi; Seyedsasan Hashemikhabir; Tammy Toscos; Huanmei Wu (BCB, 2016)

Task assignment in tree-like hierarchical structures. - Cem Evrendilek; Ismail Hakki Toroslu; Seyedsasan Hashemikhabir (J. Comb. Optim., 2017)

A Framework for Identifying Genotypic Information from Clinical Records: Exploiting Integrated Ontology Structures to Transfer Annotations between ICD Codes and Gene Ontologies. - Seyedsasan Hashemikhabir; Ran Xia; Yang Xiang; Sarath Chandra Janga (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)