Masks2Metrics (M2M): A Matlab Toolbox for Gold Standard Morphometrics. - Shadia Mikhael; Calum D. Gray (J. Open Source Softw., 2018)

A critical analysis of neuroanatomical software protocols reveals clinically relevant differences in parcellation schemes. - Shadia Mikhael; Corné Hoogendoorn; Maria del C. Valdés Hernández; Cyril R. Pernet (NeuroImage, 2018)

Ontological attention ensembles for capturing semantic concepts in ICD code prediction from clinical text. - Matús Falis; Maciej Pajak; Aneta Lisowska; Patrick Schrempf; Lucas Deckers; Shadia Mikhael; Sotirios A. Tsaftaris; Alison O'Neil (LOUHI@EMNLP, 2019)

A controlled comparison of thickness, volume and surface areas from multiple cortical parcellation packages. - Shadia Mikhael; Cyril R. Pernet (BMC Bioinform., 2019)

Paying Per-Label Attention for Multi-label Extraction from Radiology Reports. - Patrick Schrempf; Hannah Watson; Shadia Mikhael; Maciej Pajak; Matús Falis; Aneta Lisowska; Keith W. Muir; David Harris-Birtill; Alison Q. O'Neil (iMIMIC/MIL3ID/LABELS@MICCAI, 2020)

The role of noise in denoising models for anomaly detection in medical images. - Antanas Kascenas; Pedro Sanchez; Patrick Schrempf; Chaoyang Wang; William Clackett; Shadia Mikhael; Jeremy P. Voisey; Keith A. Goatman; Alexander Weir; Nicolas Pugeault; Sotirios A. Tsaftaris; Alison Q. O'Neil (Medical Image Anal., 2023)

Conformal Coronary Calcification Volume Estimation with Conditional Coverage via Histogram Clustering. - Olivier Jaubert; Salman Mohammadi; Keith A. Goatman; Shadia Mikhael; Conor Bradley; Rebecca Hughes; Richard Good; John H. Hipwell; Sonia Dahdouh (ISBI, 2025)