Comparing Discrete and Piecewise Affine Differential Equation Models of Gene Regulatory Networks. - Shahrad Jamshidi; Heike Siebert; Alexander Bockmayr (IPCAT, 2012)

Preservation of dynamic properties in qualitative modeling frameworks for gene regulatory networks. - Shahrad Jamshidi; Heike Siebert; Alexander Bockmayr (Biosyst., 2013)

Towards an algorithmic guide to Spiral Galaxies. - Guillaume Fertin; Shahrad Jamshidi; Christian Komusiewicz (Theor. Comput. Sci., 2015)