Reconstructing the Genomic Content of Microbiome Taxa through Shotgun Metagenomic Deconvolution. - Rogan Carr; Shai S. Shen-Orr; Elhanan Borenstein (PLoS Comput. Biol., 2013)

Sensitivity analysis for inference with partially identifiable covariance matrices. - Max Grazier G'Sell; Shai S. Shen-Orr; Robert Tibshirani (Comput. Stat., 2014)

Batch correction evaluation framework using a-priori gene-gene associations: applied to the GTEx dataset. - Judith Somekh; Shai S. Shen-Orr; Isaac S. Kohane (BMC Bioinform., 2019)

Cell-specific priors rescue differential gene expression in spatial spot-based technologies. - Ornit Nahman; Timothy J. Few-Cooper; Shai S. Shen-Orr (Briefings Bioinform., 2024)