Multi-Task Pharmacovigilance Mining from Social Media Posts. - Shaika Chowdhury; Chenwei Zhang; Philip S. Yu (WWW, 2018)

Mixed Pooling Multi-View Attention Autoencoder for Representation Learning in Healthcare. - Shaika Chowdhury; Chenwei Zhang; Philip S. Yu; Yuan Luo 001 (CoRR, 2019)

Hierarchical Semantic Correspondence Learning for Post-Discharge Patient Mortality Prediction. - Shaika Chowdhury; Chenwei Zhang; Philip S. Yu; Yuan Luo 001 (CoRR, 2019)

Med2Meta: Learning Representations of Medical Concepts with Meta-embeddings. - Shaika Chowdhury; Chenwei Zhang; Philip S. Yu; Yuan Luo 001 (HEALTHINF, 2020)

Improving Medical NLI Using Context-Aware Domain Knowledge. - Shaika Chowdhury; Philip S. Yu; Yuan Luo 001 (*SEM@COLING, 2020)

Interpretable Multi-Step Reasoning with Knowledge Extraction on Complex Healthcare Question Answering. - Ye Liu 006; Shaika Chowdhury; Chenwei Zhang; Cornelia Caragea; Philip S. Yu (CoRR, 2020)

MedTextSeg: A Deep Dual Sequential Model for Section Segmentation in Medical Reports. - Shaika Chowdhury; Halid Ziya Yerebakan; Yoshihisa Shinagawa; Philip S. Yu (IEEE BigData, 2021)

Ensemble Fine-tuned mBERT for Translation Quality Estimation. - Shaika Chowdhury; Naouel Baili; Brian Vannah (WMT@EMNLP, 2021)

BETA: a comprehensive benchmark for computational drug-target prediction. - Nansu Zong; Ning Li 045; Andrew Wen; Victoria Ngo; Yue Yu; Ming Huang 006; Shaika Chowdhury; Chao Jiang 002; Sunyang Fu; Richard Weinshilboum; Guoqian Jiang; Lawrence Hunter; et al. (Briefings Bioinform., 2022)

Evaluating Drug Effectiveness for Antihypertensives in Heart Failure Prognosis: Leveraging Composite Clinical Endpoints and Biomarkers from Electronic Health Records. - Shaika Chowdhury; Yongbin Chen; Xiao Ma 019; Qiying Dai; Yue Yu; Nansu Zong (BCB, 2023)

Evaluation of GPT-3 for Anti-Cancer Drug Sensitivity Prediction. - Shaika Chowdhury; Sivaraman Rajaganapathy; Lichao Sun; James R. Cerhan; Nansu Zong (CoRR, 2023)

Stratifying heart failure patients with graph neural network and transformer using Electronic Health Records to optimize drug response prediction. - Shaika Chowdhury; Yongbin Chen; Pengyang Li; Sivaraman Rajaganapathy; Andrew Wen; Xiao Ma 019; Qiying Dai; Yue Yu; Sunyang Fu; Xiaoqian Jiang; Zhe He 001; Sunghwan Sohn; et al. (J. Am. Medical Informatics Assoc., 2024)

Advancing efficacy prediction for electronic health records based emulated trials in repurposing heart failure therapies. - Nansu Zong; Shaika Chowdhury; Shibo Zhou; Sivaraman Rajaganapathy; Yue Yu; Liewei Wang; Qiying Dai; Pengyang Li; Xiaoke Liu; Suzette J. Bielinski; Jun Chen; Yongbin Chen; et al. (npj Digit. Medicine, 2025)

LLM-Match: An Open-Sourced Patient Matching Model Based on Large Language Models and Retrieval-Augmented Generation. - Xiaodi Li; Shaika Chowdhury; Chung-Il Wi; Maria Vassilaki; Xiaoke Liu; Terence T. Sio; Owen Garrick; Young J. Juhn; James R. Cerhan; Cui Tao; Nansu Zong (CoRR, 2025)