ClassAMP: A Prediction Tool for Classification of Antimicrobial Peptides. - Shaini Joseph; Shreyas Karnik; Pravin Nilawe; Vaidyanathan K. Jayaraman; Susan Idicula-Thomas (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

PCOSKB: A KnowledgeBase on genes, diseases, ontology terms and biochemical pathways associated with PolyCystic Ovary Syndrome. - Shaini Joseph; Ram Shankar Barai; Rasika Bhujbalrao; Susan Idicula-Thomas (Nucleic Acids Res., 2016)

Endometriosis Knowledgebase: a gene-based resource on endometriosis. - Shaini Joseph; Smita D. Mahale (Database J. Biol. Databases Curation, 2019)

Integrated data driven analysis identifies potential candidate genes associated with PCOS. - Shaini Joseph; Krutika Patil; Niharika Rahate; Jatin Shah; Srabani Mukherjee; Smita D. Mahale (Comput. Biol. Chem., 2024)