Identifying a Central Nervous System Perturbation that Explains Peripheral Hypocortisolism by Modeling the HPA Axis. - Shakti Gupta; Eric Aslakson; Suzanne D. Vernon (CBMS, 2006)

Identification of Crosstalk between Phosphoprotein Signaling Pathways in RAW 264.7 Macrophage Cells. - Shakti Gupta; Mano Ram Maurya; Shankar Subramaniam (PLoS Comput. Biol., 2010)

Integration of lipidomics and transcriptomics data towards a systems biology model of sphingolipid metabolism. - Shakti Gupta; Mano Ram Maurya; Alfred H. Merrill Jr.; Christopher K. Glass; Shankar Subramaniam (BMC Syst. Biol., 2011)

B-cell Ligand Processing Pathways Detected by Large-scale Comparative Analysis. - Fadi Towfic; Shakti Gupta; Vasant G. Honavar; Shankar Subramaniam (Genom. Proteom. Bioinform., 2012)

A combined omics study on activated macrophages - enhanced role of STATs in apoptosis, immunity and lipid metabolism. - Ashok Reddy Dinasarapu; Shakti Gupta; Mano Ram Maurya; Eoin Fahy; Jun Min; Manish Sud; Merril J. Gersten; Christopher K. Glass; Shankar Subramaniam (Bioinform., 2013)