Protein secondary structure prediction using a small training set (compact model) combined with a Complex-valued neural network approach. - Shamima Rashid; Saras Saraswathi; Andrzej Kloczkowski; Suresh Sundaram 002; Andrzej Kolinski (BMC Bioinform., 2016)

Jupytope: computational extraction of structural properties of viral epitopes. - Shamima Rashid; Teng Ann Ng; Chee Keong Kwoh 001 (Briefings Bioinform., 2022)

PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction. - Zhang Wan; Zhuoyi Lin; Shamima Rashid; Shaun Yue-Hao Ng; Rui Yin 002; J. Senthilnath 001; Chee Keong Kwoh 001 (BIBM, 2023)

Empirical Study of Protein Feature Representation on Deep Belief Networks Trained With Small Data for Secondary Structure Prediction. - Shamima Rashid; Suresh Sundaram 002; Chee Keong Kwoh 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

Virulence network of interacting domains of influenza a and mouse proteins. - Teng Ann Ng; Shamima Rashid; Chee Keong Kwoh 001 (Frontiers Bioinform., 2023)