BioOptimizer: a Bayesian scoring function approach to motif discovery. - Shane T. Jensen; Jun S. Liu (Bioinform., 2004)

An Interaction-Dependent Model for Transcription Factor Binding. - Li-San Wang; Shane T. Jensen; Sridhar Hannenhalli (Systems Biology and Regulatory Genomics, 2005)

BEST: Binding-site Estimation Suite of Tools. - Dongsheng Che; Shane T. Jensen; Liming Cai; Jun S. Liu (Bioinform., 2005)

Combining phylogenetic motif discovery and motif clustering to predict co-regulated genes. - Shane T. Jensen; Lei Shen; Jun S. Liu (Bioinform., 2005)

GAME: detecting cis-regulatory elements using a genetic algorithm. - Zhi Wei 001; Shane T. Jensen (Bioinform., 2006)

Multiway Clustering for Creating Biomedical Term Sets. - Vasileios Kandylas; Lyle H. Ungar; Ted Sandler; Shane T. Jensen (BIBM, 2008)

PFP: A Computational Framework for Phylogenetic Footprinting in Prokaryotic Genomes. - Dongsheng Che; Guojun Li; Shane T. Jensen; Jun S. Liu; Ying Xu 001 (ISBRA, 2008)

A spatially varying two-sample recombinant coalescent, with applications to HIV escape response. - Alexander Braunstein; Zhi Wei 001; Shane T. Jensen; Jon D. McAuliffe (NIPS, 2008)

A Bayesian approach to efficient differential allocation for resampling-based significance testing. - Shane T. Jensen; Sameer Soi; Li-San Wang (BMC Bioinform., 2009)

An Alternative Prior Process for Nonparametric Bayesian Clustering. - Hanna M. Wallach; Shane T. Jensen; Lee H. Dicker; Katherine A. Heller (AISTATS, 2010)

Commentary - A Latent Variable Perspective of Copula Modeling. - Edward I. George; Shane T. Jensen (Mark. Sci., 2011)

A Level-set Hit-and-run Sampler for Quasi-Concave Distributions. - Shane T. Jensen; Dean P. Foster (AISTATS, 2014)

Bayesian Clustering of Player Styles for Multiplayer Games. - Aline Normoyle; Shane T. Jensen (AIIDE, 2015)

Description and Characterization of a Novel Method for Partial Volume Simulation in Software Breast Phantoms. - Feiyu Chen; Predrag R. Bakic; Andrew D. A. Maidment; Shane T. Jensen; Xiquan Shi; David D. Pokrajac (IEEE Trans. Medical Imaging, 2015)

Tree-Structured Boosting: Connections Between Gradient Boosted Stumps and Full Decision Trees. - José-Marcio Luna; Eric Eaton; Lyle H. Ungar; Eric S. Diffenderfer; Shane T. Jensen; Efstathios D. Gennatas; Mateo Wirth; Charles B. Simone II; Timothy D. Solberg; Gilmer Valdes (CoRR, 2017)

Bayesian Learning of Play Styles in Multiplayer Video Games. - Aline Normoyle; Shane T. Jensen (CoRR, 2021)