IsoPlot: a database for comparison of mRNA isoforms in fruit fly and mosquitoes. - I-Man Ng; Jia-Hsin Huang; Shang-Chi Tsai; Huai-Kuang Tsai (Database J. Biol. Databases Curation, 2017)

xSense: Learning Sense-Separated Sparse Representations and Textual Definitions for Explainable Word Sense Networks. - Ting-Yun Chang; Ta-Chung Chi; Shang-Chi Tsai; Yun-Nung Chen (CoRR, 2018)

Leveraging Hierarchical Category Knowledge for Data-Imbalanced Multi-Label Diagnostic Text Understanding. - Shang-Chi Tsai; Ting-Yun Chang; Yun-Nung Chen (LOUHI@EMNLP, 2019)

Modeling Diagnostic Label Correlation for Automatic ICD Coding. - Shang-Chi Tsai; Chao-Wei Huang; Yun-Nung Chen (NAACL-HLT, 2021)

PLM-ICD: Automatic ICD Coding with Pretrained Language Models. - Chao-Wei Huang; Shang-Chi Tsai; Yun-Nung Chen (CoRR, 2022)

Balancing Knowledge Delivery and Emotional Comfort in Healthcare Conversational Systems. - Shang-Chi Tsai; Yun-Nung Chen (CoRR, 2025)

ASMR: Augmenting Life Scenario using Large Generative Models for Robotic Action Reflection. - Shang-Chi Tsai; Seiya Kawano; Angel F. Garcia Contreras; Koichiro Yoshino; Yun-Nung Chen (CoRR, 2025)