HPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq data. - Zhaohui S. Qin; Jianjun Yu; Jincheng Shen; Christopher A. Maher; Ming Hu 001; Shanker Kalyana-Sundaram; Jindan Yu; Arul M. Chinnaiyan (BMC Bioinform., 2010)

Gene Fusion Markup Language: a prototype for exchanging gene fusion data. - Shanker Kalyana-Sundaram; Achiraman Shanmugam; Arul M. Chinnaiyan (BMC Bioinform., 2012)