Quantifying differences in cell line population dynamics using CellPD. - Edwin F. Juarez; Roy Lau; Samuel H. Friedman; Ahmadreza Ghaffarizadeh; Edmond A. Jonckheere; David B. Agus; Shannon M. Mumenthaler; Paul Macklin (BMC Syst. Biol., 2016)

Leveraging Hypoxia-Activated Prodrugs to Prevent Drug Resistance in Solid Tumors. - Danika Lindsay; Colleen M. Garvey; Shannon M. Mumenthaler; Jasmine Foo (PLoS Comput. Biol., 2016)

PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems. - Ahmadreza Ghaffarizadeh; Randy W. Heiland; Samuel H. Friedman; Shannon M. Mumenthaler; Paul Macklin (PLoS Comput. Biol., 2018)

Understanding patient-derived tumor organoid growth through an integrated imaging and mathematical modeling framework. - Einar Bjarki Gunnarsson; Seungil Kim; Brandon Choi; J. Karl Schmid; Karn Kaura; Heinz-Josef Lenz; Shannon M. Mumenthaler; Jasmine Foo (PLoS Comput. Biol., 2024)