SWAMP: Smith-Waterman using associative massive parallelism. - Shannon Steinfadt; Johnnie W. Baker (IPDPS, 2008)

SWAMP+: Enhanced Smith-Waterman Search for Parallel Models. - Shannon Steinfadt (ICPP Workshops, 2012)

Fine-grained parallel implementations for SWAMP+ Smith-Waterman alignment. - Shannon Steinfadt (Parallel Comput., 2013)