QuickMIRSeq: a pipeline for quick and accurate quantification of both known miRNAs and isomiRs by jointly processing multiple samples from microRNA sequencing. - Shanrong Zhao; William Gordon; Sarah Du; Chi Zhang; Wen He; Li Xi; Sachin Mathur; Michael Agostino; Theresa Paradis; David von Schack; Michael Vincent; Baohong Zhang (BMC Bioinform., 2017)

Cloud Computing - Architecture and Applications. - Jaydip Sen; Shanrong Zhao; Xiaoying Wang 002; Guojing Zhang; Mengqin Yang; Jian Wang 060; Yun Long; Sergey Andreev 001; Roman Florea; Aleksandr Ometov; Adam Surak; Yevgeni Koucheryavy; et al. (CoRR, 2017)

canvasDesigner: a versatile interactive high-resolution scientific multi-panel visualization toolkit. - Baohong Zhang; Shanrong Zhao; Isaac Neuhaus (Bioinform., 2018)

Standard machine learning approaches outperform deep representation learning on phenotype prediction from transcriptomics data. - Aaron M. Smith; Jonathan R. Walsh; John Long; Craig B. Davis; Peter Henstock; Martin R. Hodge; Mateusz Maciejewski; Xinmeng Jasmine Mu; Stephen Ra; Shanrong Zhao; Daniel Ziemek; Charles K. Fisher (BMC Bioinform., 2020)