MAPTrans: mutual attention transformer with dynamic meta-path pruning for drug repositioning. - Shanyang Ding; Dongjiang Niu; Xiaofeng Wang; Zhixin Zhang; Qunhao Zhang; Jun Xiao; Zhen Li 024 (Briefings Bioinform., 2025)

Drug-drug interaction prediction based on graph contrastive learning and dual-view fusion. - Shanyang Ding; Dongjiang Niu; Mingxuan Li; Zhixin Zhang; Zhen Li 024 (Comput. Biol. Chem., 2025)

MFC-PPI: protein-protein interaction prediction with multimodal feature fusion and contrastive learning. - Zhixin Zhang; Qunhao Zhang; Jun Xiao; Shanyang Ding; Zhen Li (J. Supercomput., 2025)