SteinerNet: a web server for integrating 'omic' data to discover hidden components of response pathways. - Nurcan Tuncbag; Scott McCallum; Shao-Shan Carol Huang; Ernest Fraenkel (Nucleic Acids Res., 2012)

Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem. - Nurcan Tuncbag; Alfredo Braunstein; Andrea Pagnani; Shao-Shan Carol Huang; Jennifer T. Chayes; Christian Borgs; Riccardo Zecchina; Ernest Fraenkel (J. Comput. Biol., 2013)

Linking Proteomic and Transcriptional Data through the Interactome and Epigenome Reveals a Map of Oncogene-induced Signaling. - Shao-Shan Carol Huang; David C. Clarke; Sara J. C. Gosline; Adam Labadorf; Candace R. Chouinard; William Gordon; Douglas A. Lauffenburger; Ernest Fraenkel (PLoS Comput. Biol., 2013)

Robust discovery of gene regulatory networks from single-cell gene expression data by Causal Inference Using Composition of Transactions. - Abbas Shojaee; Shao-Shan Carol Huang (Briefings Bioinform., 2023)