WERAM: a database of writers, erasers and readers of histone acetylation and methylation in eukaryotes. - Yang Xu; Shuang Zhang; Shaofeng Lin; Yaping Guo; Wankun Deng; Ying Zhang 052; Yu Xue 001 (Nucleic Acids Res., 2017)

PTMD: A Database of Human Disease-associated Post-translational Modifications. - Hao-Dong Xu; Yongbo Wang; Shaofeng Lin; Wankun Deng; Di Peng; Qinghua Cui; Yu Xue 001 (Genom. Proteom. Bioinform., 2018)

iUUCD 2.0: an update with rich annotations for ubiquitin and ubiquitin-like conjugations. - Jiaqi Zhou 003; Yang Xu; Shaofeng Lin; Yaping Guo; Wankun Deng; Ying Zhang 052; Anyuan Guo; Yu Xue 001 (Nucleic Acids Res., 2018)

Research on Telemedical Monitoring System Based on Homomorphic Encryption. - Fei Xiao; Shaofeng Lin; Wei Tan; Fengchen Qian; Xiaopeng Li (ICAIS (3), 2019)

iEKPD 2.0: an update with rich annotations for eukaryotic protein kinases, protein phosphatases and proteins containing phosphoprotein-binding domains. - Yaping Guo; Di Peng; Jiaqi Zhou 003; Shaofeng Lin; Chenwei Wang; Wanshan Ning; Hao-Dong Xu; Wankun Deng; Yu Xue 001 (Nucleic Acids Res., 2019)

GPS 5.0: An Update on the Prediction of Kinase-specific Phosphorylation Sites in Proteins. - Chenwei Wang; Hao-Dong Xu; Shaofeng Lin; Wankun Deng; Jiaqi Zhou 003; Ying Zhang 052; Ying Shi; Di Peng; Yu Xue 001 (Genom. Proteom. Bioinform., 2020)

DrLLPS: a data resource of liquid?liquid phase separation in eukaryotes. - Wanshan Ning; Yaping Guo; Shaofeng Lin; Bin Mei; Yu Wu; Peiran Jiang; Xiaodan Tan; Weizhi Zhang 002; Guowei Chen; Di Peng; Liang Chu (Nucleic Acids Res., 2020)

Security Management for Human Resource Data Based on Blockchain Technology. - Wenjia Xie; Shaofeng Lin; Changfu Dong; Wanli Kou; Meimei He (DSDE, 2021)

EPSD: a well-annotated data resource of protein phosphorylation sites in eukaryotes. - Shaofeng Lin; Chenwei Wang; Jiaqi Zhou 003; Ying Shi; Chen Ruan; Yiran Tu; Lan Yao; Di Peng; Yu Xue 001 (Briefings Bioinform., 2021)

Brightness Compensation for GF-3 SAR Images Based on Cycle-Consistent Adversarial Networks. - Shaofeng Lin; Zengguo Sun; Xuejun Peng; Lin Ni; Genfeng Wen; Weirong Chen; Zheng Lu; Qianfu Chen (Inf. Technol. Control., 2021)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Shuhui Song; Lina Ma; et al. (Nucleic Acids Res., 2021)

GPS-Uber: a hybrid-learning framework for prediction of general and E3-specific lysine ubiquitination sites. - Chenwei Wang; Xiaodan Tan; Dachao Tang; Yujie Gou; Cheng Han; Wanshan Ning; Shaofeng Lin; Weizhi Zhang 002; Miaomiao Chen; Di Peng; Yu Xue 001 (Briefings Bioinform., 2022)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Jingyao Zeng; Yadong Zhang; et al. (Nucleic Acids Res., 2022)

CPLM 4.0: an updated database with rich annotations for protein lysine modifications. - Weizhi Zhang 002; Xiaodan Tan; Shaofeng Lin; Yujie Gou; Cheng Han; Chi Zhang; Wanshan Ning; Chenwei Wang; Yu Xue 001 (Nucleic Acids Res., 2022)

MetaDegron: multimodal feature-integrated protein language model for predicting E3 ligase targeted degrons. - Mengqiu Zheng; Shaofeng Lin; Kunqi Chen; Ruifeng Hu 002; Liming Wang; Zhongming Zhao; Haodong Xu (Briefings Bioinform., 2024)

Optimizing Secure Data Transmission in GPU-Accelerated Collaborative Computing via Metadata Reconstruction. - Shaofeng Lin; Qiming Zhou; Yeping He; Mingshu Lit; Hengtai Ma; Xiaohui Wu (CSCWD, 2025)

Deciphering the MHC immunopeptidome of human cancers with Ligand.MHC atlas. - Zhi Ran; Meilin Mu; Shaofeng Lin; Tao Wang; Jing Zeng; Lan Kuang; Kunqi Chen; Shengbao Suo; Kai Yuan; Hao-Dong Xu (Briefings Bioinform., 2025)