Designing Biological Sequences without Prior Knowledge Using Evolutionary Reinforcement Learning. - Xi Zeng; Xiaotian Hao; Hongyao Tang; Zhentao Tang; Shaoqing Jiao; Dazhi Lu; Jiajie Peng (AAAI, 2024)

CellAgent: An LLM-driven Multi-Agent Framework for Automated Single-cell Data Analysis. - Yihang Xiao; Jinyi Liu 002; Yan Zheng 002; Xiaohan Xie; Jianye Hao; Mingzhi Li; Ruitao Wang; Fei Ni 001; Yuxiao Li; Jintian Luo; Shaoqing Jiao; Jiajie Peng (CoRR, 2024)

SWAMamba: A Sliding Window Attention Mamba Framework for Predicting Translation Elongation Rates. - Xi Zeng; Fei Ni 001; Shaoqing Jiao; Dazhi Lu; Jianye Hao; Jiajie Peng (AAAI, 2025)

scMamba: A Scalable Foundation Model for Single-Cell Multi-Omics Integration Beyond Highly Variable Feature Selection. - Zhen Yuan; Shaoqing Jiao; Yihang Xiao; Jiajie Peng (CoRR, 2025)