Real-Time Simulation of Deformable Soft Tissue Based on Mass-Spring and Medial Representation. - Shaoting Zhang 001; Lixu Gu; Pengfei Huang; Jianfeng Xu (CVBIA, 2005)

A Visual Validation Method Based on Point Mappings for Medical Image Segmentation. - Feng Qian 001; Lixu Gu; Shaoting Zhang 001 (EMBC, 2006)

Real-Time Virtual Surgery Simulation Employing MM-Model and Adaptive Spatial Hash. - Shaoting Zhang 001; Lixu Gu; Weiming Liang; Jingsi Zhang; Feng Qian 001 (ICAT, 2006)

Real-Time Simulation for Global Deformation of Soft Tissue Using Deformable Centerline and Medial Representation. - Pengfei Huang; Lixu Gu; Xiaobo Li; Shaoting Zhang 001; Jianfeng Xu; Chen Lin; Qi Fang (ISBMS, 2006)

The Framework for Real-Time Simulation of Deformable Soft-Tissue Using a Hybrid Elastic Model. - Shaoting Zhang 001; Lixu Gu; Weiming Liang; Pengfei Huang; Jan Boehm 002; Jianfeng Xu (ISBMS, 2006)

LV Motion and Strain Computation from tMRI Based on Meshless Deformable Models. - Xiaoxu Wang; Ting Chen 001; Shaoting Zhang 001; Dimitris N. Metaxas; Leon Axel (MICCAI (1), 2008)

3D segmentation of rodent brains using deformable models and variational methods. - Shaoting Zhang 001; Jinghao Zhou; Xiaoxu Wang; Sukmoon Chang; Dimitris N. Metaxas; George J. Pappas; Foteini Delis; Nora D. Volkow; Gene-Jack Wang; Panayotis K. Thanos; Chandra Kambhamettu (CVPR Workshops, 2009)

LV Surface Reconstruction from Sparse TMRI Using Laplacian Surface Deformation and Optimization. - Shaoting Zhang 001; Xiaoxu Wang; Dimitris N. Metaxas; Ting Chen 001; Leon Axel (ISBI, 2009)

Segmentation of Rodent Brains from MRI Based on a Novel Statistical Structure Prediction Method. - Jinghao Zhou; Sukmoon Chang; Shaoting Zhang 001; George J. Pappas; Michael Michaelides; Foteini Delis; Nora D. Volkow; Panayotis K. Thanos; Dimitris N. Metaxas (ISBI, 2009)

Image retrieval via probabilistic hypergraph ranking. - Yuchi Huang; Qingshan Liu 001; Shaoting Zhang 001; Dimitris N. Metaxas (CVPR, 2010)

Automatic image annotation using group sparsity. - Shaoting Zhang 001; Junzhou Huang; Yuchi Huang; Yang Yu 010; Hongsheng Li 001; Dimitris N. Metaxas (CVPR, 2010)

Fast Optimization for Mixture Prior Models. - Junzhou Huang; Shaoting Zhang 001; Dimitris N. Metaxas (ECCV (3), 2010)

Hybrid Mesh Editing. - Péter Borosán; Reid Howard; Shaoting Zhang 001; Andrew Nealen (Eurographics (Short Papers), 2010)

Skeleton Based As-Rigid-As-Possible Volume Modeling. - Shaoting Zhang 001; Andrew Nealen; Dimitris N. Metaxas (Eurographics (Short Papers), 2010)

Discriminative sparse representations for cervigram image segmentation. - Shaoting Zhang 001; Junzhou Huang; Dimitris N. Metaxas; Wei Wang 057; Xiaolei Huang 001 (ISBI, 2010)

Cervigram image segmentation based on reconstructive sparse representations. - Shaoting Zhang 001; Junzhou Huang; Wei Wang 057; Xiaolei Huang 001; Dimitris N. Metaxas (Image Processing, 2010)

Sparse shape composition: A new framework for shape prior modeling. - Shaoting Zhang 001; Yiqiang Zhan; Maneesh Dewan; Junzhou Huang; Dimitris N. Metaxas; Xiang Sean Zhou (CVPR, 2011)

4D Cardiac Reconstruction Using High Resolution CT Images. - Mingchen Gao; Junzhou Huang; Shaoting Zhang 001; Zhen Qian; Szilard Voros; Dimitris N. Metaxas; Leon Axel (FIMH, 2011)

Construction of Left Ventricle 3D Shape Atlas from Cardiac MRI. - Shaoting Zhang 001; Mustafa Gökhan Uzunbas; Zhennan Yan; Mingchen Gao; Junzhou Huang; Dimitris N. Metaxas; Leon Axel (FIMH, 2011)

Optimal object matching via convexification and composition. - Hongsheng Li 001; Junzhou Huang; Shaoting Zhang 001; Xiaolei Huang 001 (ICCV, 2011)

A 3D Laplacian-driven parametric deformable model. - Tian Shen; Xiaolei Huang 001; Hongsheng Li 001; Edward Kim; Shaoting Zhang 001; Junzhou Huang (ICCV, 2011)

Group sparsity based classification for cervigram segmentation. - Yang Yu 010; Junzhou Huang; Shaoting Zhang 001; Christophe Restif; Xiaolei Huang 001; Dimitris N. Metaxas (ISBI, 2011)

3D segmentation of rodent brain structures using Active Volume Model with shape priors. - Shaoting Zhang 001; Junzhou Huang; Mustafa Gökhan Uzunbas; Tian Shen; Foteini Delis; Xiaolei Huang 001; Nora D. Volkow; Panayotis K. Thanos; Dimitris N. Metaxas (ISBI, 2011)

Automatic Alignment of Brain MR Scout Scans Using Data-adaptive Multi-structural Model. - Ting Chen 001; Yiqiang Zhan; Shaoting Zhang 001; Maneesh Dewan (MICCAI (2), 2011)

Using High Resolution Cardiac CT Data to Model and Visualize Patient-Specific Interactions between Trabeculae and Blood Flow. - Scott Kulp; Mingchen Gao; Shaoting Zhang 001; Zhen Qian; Szilard Voros; Dimitris N. Metaxas; Leon Axel (MICCAI (1), 2011)

3D Segmentation of Rodent Brain Structures Using Hierarchical Shape Priors and Deformable Models. - Shaoting Zhang 001; Junzhou Huang; Mustafa Gökhan Uzunbas; Tian Shen; Foteini Delis; Xiaolei Huang 001; Nora D. Volkow; Panayotis K. Thanos; Dimitris N. Metaxas (MICCAI (3), 2011)

Deformable Segmentation via Sparse Shape Representation. - Shaoting Zhang 001; Yiqiang Zhan; Maneesh Dewan; Junzhou Huang; Dimitris N. Metaxas; Xiang Sean Zhou (MICCAI (2), 2011)

Robust mesh editing using Laplacian coordinates. - Shaoting Zhang 001; Junzhou Huang; Dimitris N. Metaxas (Graph. Model., 2011)

Composite splitting algorithms for convex optimization. - Junzhou Huang; Shaoting Zhang 001; Hongsheng Li 001; Dimitris N. Metaxas (Comput. Vis. Image Underst., 2011)

Efficient MR image reconstruction for compressed MR imaging. - Junzhou Huang; Shaoting Zhang 001; Dimitris N. Metaxas (Medical Image Anal., 2011)

Background Subtraction Using Low Rank and Group Sparsity Constraints. - Xinyi Cui; Junzhou Huang; Shaoting Zhang 001; Dimitris N. Metaxas (ECCV (1), 2012)

Query Specific Fusion for Image Retrieval. - Shaoting Zhang 001; Ming Yang 007; Timothée Cour; Kai Yu 001; Dimitris N. Metaxas (ECCV (2), 2012)

Left endocardium segmentation using spatio-temporal Metamorphs. - Xinyi Cui; Shaoting Zhang 001; Junzhou Huang; Xiaolei Huang 001; Dimitris N. Metaxas; Leon Axel (ISBI, 2012)

Segmentation of myocardium using deformable regions and graph cuts. - Mustafa Gökhan Uzunbas; Shaoting Zhang 001; Kilian M. Pohl; Dimitris N. Metaxas; Leon Axel (ISBI, 2012)

Efficient sparse shape composition with its applications in biomedical image analysis: An overview. - Shaoting Zhang 001; Yiqiang Zhan; Yan Zhou; Dimitris N. Metaxas (ISBI, 2012)

Left endocardium tracking via collaborative trackers and shape prior. - Yan Zhou; Shaoting Zhang 001; Nikolaos V. Tsekos; Ioannis T. Pavlidis; Dimitris N. Metaxas (ISBI, 2012)

Simplified Labeling Process for Medical Image Segmentation. - Mingchen Gao; Junzhou Huang; Xiaolei Huang 001; Shaoting Zhang 001; Dimitris N. Metaxas (MICCAI (2), 2012)

Shape Prior Modeling Using Sparse Representation and Online Dictionary Learning. - Shaoting Zhang 001; Yiqiang Zhan; Yan Zhou; Mustafa Gökhan Uzunbas; Dimitris N. Metaxas (MICCAI (3), 2012)

Temporal Spectral Residual for fast salient motion detection. - Xinyi Cui; Qingshan Liu 001; Shaoting Zhang 001; Fei Yang 001; Dimitris N. Metaxas (Neurocomputing, 2012)

Towards robust and effective shape modeling: Sparse shape composition. - Shaoting Zhang 001; Yiqiang Zhan; Maneesh Dewan; Junzhou Huang; Dimitris N. Metaxas; Xiang Sean Zhou (Medical Image Anal., 2012)

Deformable segmentation via sparse representation and dictionary learning. - Shaoting Zhang 001; Yiqiang Zhan; Dimitris N. Metaxas (Medical Image Anal., 2012)

Automatic Image Annotation and Retrieval Using Group Sparsity. - Shaoting Zhang 001; Junzhou Huang; Hongsheng Li 001; Dimitris N. Metaxas (IEEE Trans. Syst. Man Cybern. Part B, 2012)

Large Scale Medical Image Search via Unsupervised PCA Hashing. - Xiang Yu 002; Shaoting Zhang 001; Bo Liu 005; Lin Zhong 002; Dimitris N. Metaxas (CVPR Workshops, 2013)

Segmentation using Sparse Shape Composition and minimally supervised method in liver surgery planning system. - Guotai Wang; Shaoting Zhang 001; Feng Li; Lixu Gu (EMBC, 2013)

Recognizing eyebrow and periodic head gestures using CRFs for non-manual grammatical marker detection in ASL. - Jingjing Liu 001; Bo Liu 005; Shaoting Zhang 001; Fei Yang 001; Peng Yang 001; Dimitris N. Metaxas; Carol Neidle (FG, 2013)

Automated analysis of interactional synchrony using robust facial tracking and expression recognition. - Xiang Yu 002; Shaoting Zhang 001; Yang Yu 010; Norah E. Dunbar; Matthew L. Jensen; Judee K. Burgoon; Dimitris N. Metaxas (FG, 2013)

Pose-Free Facial Landmark Fitting via Optimized Part Mixtures and Cascaded Deformable Shape Model. - Xiang Yu 002; Junzhou Huang; Shaoting Zhang 001; Wang Yan; Dimitris N. Metaxas (ICCV, 2013)

Segmenting the Papillary Muscles and the Trabeculae from High Resolution Cardiac CT through Restoration of Topological Handles. - Mingchen Gao; Chao Chen 012; Shaoting Zhang 001; Zhen Qian; Dimitris N. Metaxas; Leon Axel (IPMI, 2013)

Sparse Deformable Models with Application to Cardiac Motion Analysis. - Yang Yu 010; Shaoting Zhang 001; Junzhou Huang; Dimitris N. Metaxas; Leon Axel (IPMI, 2013)

High resolution cardiac shape registration using Ricci flow. - Mingchen Gao; Rui Shi; Shaoting Zhang 001; Wei Zeng 002; Zhen Qian; Xianfeng David Gu; Dimitris N. Metaxas; Leon Axel (ISBI, 2013)

Practical patient-specific cardiac blood flow simulations using SPH. - Scott Kulp; Mingchen Gao; Shaoting Zhang 001; Zhen Qian; Szilard Voros; Dimitris N. Metaxas; Leon Axel (ISBI, 2013)

Accurate segmentation of brain images into 34 structures combining a non-stationary adaptive statistical atlas and a multi-atlas with applications to Alzheimer'S disease. - Zhennan Yan; Shaoting Zhang 001; Xiaofeng Liu; Dimitris N. Metaxas; Albert Montillo (ISBI, 2013)

Mouse LV 3D motion and strain analysis using tagged MRI. - Yang Yu 010; Shaoting Zhang 001; Zhennan Yan; Song Chen; Rong Zhou; Dimitris N. Metaxas (ISBI, 2013)

Papillary muscles analysis from high resolution CT using spatial-temporal skeleton extraction. - Lin Zhong 002; Shaoting Zhang 001; Mingchen Gao; Junzhou Huang; Zhen Qian; Dimitris N. Metaxas; Leon Axel (ISBI, 2013)

Localization of Multi-pose and Occluded Facial Features via Sparse Shape Representation. - Yang Yu 010; Shaoting Zhang 001; Fei Yang 001; Dimitris N. Metaxas (ISVC (1), 2013)

Collaborative Multi Organ Segmentation by Integrating Deformable and Graphical Models. - Mustafa Gökhan Uzunbas; Chao Chen 012; Shaoting Zhang 001; Kilian M. Pohl; Kang Li 004; Dimitris N. Metaxas (MICCAI (2), 2013)

Accurate Whole-Brain Segmentation for Alzheimer's Disease Combining an Adaptive Statistical Atlas and Multi-atlas. - Zhennan Yan; Shaoting Zhang 001; Xiaofeng Liu; Dimitris N. Metaxas; Albert Montillo (MCV, 2013)

3D anatomical shape atlas construction using mesh quality preserved deformable models. - Shaoting Zhang 001; Yiqiang Zhan; Xinyi Cui; Mingchen Gao; Junzhou Huang; Dimitris N. Metaxas (Comput. Vis. Image Underst., 2013)

A review of motion analysis methods for human Nonverbal Communication Computing. - Dimitris N. Metaxas; Shaoting Zhang 001 (Image Vis. Comput., 2013)

Head Pose Estimation by Instance Parameterization. - Xi Peng 005; Junzhou Huang; Qiong Hu 001; Shaoting Zhang 001; Dimitris N. Metaxas (ICPR, 2014)

An Automated and Robust Framework for Quantification of Muscle and Fat in the Thigh. - Chaowei Tan; Zhennan Yan; Shaoting Zhang 001; Boubakeur Belaroussi; Hui Jing Yu; Colin Miller; Dimitris N. Metaxas (ICPR, 2014)

Automatic Liver Segmentation and Hepatic Fat Fraction Assessment in MRI. - Zhennan Yan; Chaowei Tan; Shaoting Zhang 001; Yan Zhou; Boubakeur Belaroussi; Hui Jing Yu; Colin Miller; Dimitris N. Metaxas (ICPR, 2014)

Morphological analysis of the papillary muscles and the trabeculae. - Mingchen Gao; Chao Chen 012; Shaoting Zhang 001; Zhen Qian; Mani Vannan; Sarah Rinehart; Dimitris N. Metaxas; Leon Axel (ISBI, 2014)

Computer-aided diagnosis of mammographic masses using vocabulary tree-based image retrieval. - Menglin Jiang; Shaoting Zhang 001; Jingjing Liu 001; Tian Shen; Dimitris N. Metaxas (ISBI, 2014)

Scalable mammogram retrieval using Anchor Graph Hashing. - Jingjing Liu 001; Shaoting Zhang 001; Wei Liu 005; Xiaofan Zhang 002; Dimitris N. Metaxas (ISBI, 2014)

Myocardium segmentation combining T2 and DE MRI using Multi-Component Bivariate Gaussian mixture model. - Jie Liu; Xiahai Zhuang; Jing Liu; Shaoting Zhang 001; Guotai Wang; Lianming Wu; Jianrong Xu; Lixu Gu (ISBI, 2014)

Scalable sparse shape composition and its application to liver surgical planning. - Guotai Wang; Shaoting Zhang 001; Lixu Gu (ISBI, 2014)

Robust and efficient 3D registration via depth map-based feature point matching in image-guided neurosurgery. - Jie Yang 002; Shaoting Zhang 001; Xiahai Zhuang; Long Jiang; Lixu Gu (ISBI, 2014)

Mining histopathological images via hashing-based scalable image retrieval. - Xiaofan Zhang 002; Wei Liu 005; Shaoting Zhang 001 (ISBI, 2014)

Robust shape prior modeling based on Gaussian-Bernoulli restricted Boltzmann Machine. - Han Zhang 010; Shaoting Zhang 001; Kang Li 004; Dimitris N. Metaxas (ISBI, 2014)

Scalable Histopathological Image Analysis via Active Learning. - Yan Zhu 009; Shaoting Zhang 001; Wei Liu 005; Dimitris N. Metaxas (MICCAI (3), 2014)

Tensor Total-Variation Regularized Deconvolution for Efficient Low-Dose CT Perfusion. - Ruogu Fang; Pina C. Sanelli; Shaoting Zhang 001; Tsuhan Chen (MICCAI (1), 2014)

Detection of Mammographic Masses by Content-Based Image Retrieval. - Menglin Jiang; Shaoting Zhang 001; Dimitris N. Metaxas (MLMI, 2014)

Overview of the 2014 Workshop on Medical Computer Vision - Algorithms for Big Data (MCV 2014). - Henning Müller; Bjoern H. Menze; Georg Langs; Albert Montillo; B. Michael Kelm; Shaoting Zhang 001; Tom Weidong Cai; Dimitris N. Metaxas (MCV, 2014)

Mining Histopathological Images via Composite Hashing and Online Learning. - Xiaofan Zhang 002; Lin Yang 002; Wei Liu 005; Hai Su; Shaoting Zhang 001 (MICCAI (2), 2014)

Non-manual grammatical marker recognition based on multi-scale, spatio-temporal analysis of head pose and facial expressions. - Jingjing Liu 001; Bo Liu 005; Shaoting Zhang 001; Fei Yang 001; Peng Yang 001; Dimitris N. Metaxas; Carol Neidle (Image Vis. Comput., 2014)

Blue noise sampling method based on mixture distance. - Hongxing Qin; XiaoYang Hong; Bin Xiao 002; Shaoting Zhang 001; Guo-Yin Wang 001 (J. Electronic Imaging, 2014)

Deformable models with sparsity constraints for cardiac motion analysis. - Yang Yu 010; Shaoting Zhang 001; Kang Li 004; Dimitris N. Metaxas; Leon Axel (Medical Image Anal., 2014)

Feature Matching with Affine-Function Transformation Models. - Hongsheng Li 001; Xiaolei Huang 001; Junzhou Huang; Shaoting Zhang 001 (IEEE Trans. Pattern Anal. Mach. Intell., 2014)

Solving a Special Type of Jigsaw Puzzles: Banknote Reconstruction From a Large Number of Fragments. - Hongsheng Li 001; Yuanjie Zheng; Shaoting Zhang 001; Jian Cheng 003 (IEEE Trans. Multim., 2014)

Fine-grained histopathological image analysis via robust segmentation and large-scale retrieval. - Xiaofan Zhang 002; Hai Su; Lin Yang 002; Shaoting Zhang 001 (CVPR, 2015)

Three-dimensional head pose estimation in-the-wild. - Xi Peng 005; Junzhou Huang; Qiong Hu 001; Shaoting Zhang 001; Dimitris N. Metaxas (FG, 2015)

PIEFA: Personalized Incremental and Ensemble Face Alignment. - Xi Peng 005; Shaoting Zhang 001; Yu Yang; Dimitris N. Metaxas (ICCV, 2015)

Learning Binary Codes for Maximum Inner Product Search. - Fumin Shen; Wei Liu 005; Shaoting Zhang 001; Yang Yang 002; Heng Tao Shen (ICCV, 2015)

Weighted Hashing with Multiple Cues for Cell-Level Analysis of Histopathological Images. - Xiaofan Zhang 002; Hai Su; Lin Yang 002; Shaoting Zhang 001 (IPMI, 2015)

Leveraging coupled multi-index for scalable retrieval of mammographic masses. - Menglin Jiang; Shaoting Zhang 001; Ruogu Fang; Dimitris N. Metaxas (ISBI, 2015)

Automated anatomical landmark detection ondistal femur surface using convolutional neural network. - Dong Yang 005; Shaoting Zhang 001; Zhennan Yan; Chaowei Tan; Kang Li 004; Dimitris N. Metaxas (ISBI, 2015)

Fusing heterogeneous features for the image-guided diagnosis of intraductal breast lesions. - Xiaofan Zhang 002; Hang Dou; Tao Ju; Shaoting Zhang 001 (ISBI, 2015)

Joint Kernel-Based Supervised Hashing for Scalable Histopathological Image Analysis. - Menglin Jiang; Shaoting Zhang 001; Junzhou Huang; Lin Yang 002; Dimitris N. Metaxas (MICCAI (3), 2015)

Fast Preconditioning for Accelerated Multi-contrast MRI Reconstruction. - Ruoyu Li 002; Yeqing Li; Ruogu Fang; Shaoting Zhang 001; Hao Pan; Junzhou Huang (MICCAI (2), 2015)

Overview of the 2015 Workshop on Medical Computer Vision - Algorithms for Big Data (MCV 2015). - Henning Müller; Bjoern H. Menze; Georg Langs; Albert Montillo; B. Michael Kelm; Shaoting Zhang 001; Weidong Cai 001; Dimitris N. Metaxas (MCV@MICCAI, 2015)

Robust Cell Detection and Segmentation in Histopathological Images Using Sparse Reconstruction and Stacked Denoising Autoencoders. - Hai Su; Fuyong Xing; Xiangfei Kong; Yuanpu Xie; Shaoting Zhang 001; Lin Yang 002 (MICCAI (3), 2015)

Laplacian Shape Editing with Local Patch Based Force Field for Interactive Segmentation. - Chaowei Tan; Zhennan Yan; Kang Li 004; Dimitris N. Metaxas; Shaoting Zhang 001 (Patch-MI@MICCAI, 2015)

Toward consistent cell segmentation: quality assessment of cell segments via appearance and geometry features. - Andrew Brinker; Annika Fredrikson; Xiaofan Zhang 002; Richard Sourvenir; Shaoting Zhang 001 (Digital Pathology, 2015)

Sparsity techniques in medical imaging. - Ruogu Fang; Tsuhan Chen; Dimitris N. Metaxas; Pina C. Sanelli; Shaoting Zhang 001 (Comput. Medical Imaging Graph., 2015)

Atlas-based liver segmentation and hepatic fat-fraction assessment for clinical trials. - Zhennan Yan; Shaoting Zhang 001; Chaowei Tan; Hongxing Qin; Boubakeur Belaroussi; Hui Jing Yu; Colin Miller; Dimitris N. Metaxas (Comput. Medical Imaging Graph., 2015)

From circle to 3-sphere: Head pose estimation by instance parameterization. - Xi Peng 005; Junzhou Huang; Qiong Hu 001; Shaoting Zhang 001; Ahmed M. Elgammal; Dimitris N. Metaxas (Comput. Vis. Image Underst., 2015)

Multi-Pose and Occluded Facial Landmark Localization Via Sparse Shape Representation. - Yang Yu 010; Shaoting Zhang 001; Fei Yang 001; Dimitris N. Metaxas (Int. J. Artif. Intell. Tools, 2015)

A homotopy-based sparse representation for fast and accurate shape prior modeling in liver surgical planning. - Guotai Wang; Shaoting Zhang 001; Hongzhi Xie; Dimitris N. Metaxas; Lixu Gu (Medical Image Anal., 2015)

High-throughput histopathological image analysis via robust cell segmentation and hashing. - Xiaofan Zhang 002; Fuyong Xing; Hai Su; Lin Yang 002; Shaoting Zhang 001 (Medical Image Anal., 2015)

Query Specific Rank Fusion for Image Retrieval. - Shaoting Zhang 001; Ming Yang 007; Timothée Cour; Kai Yu 001; Dimitris N. Metaxas (IEEE Trans. Pattern Anal. Mach. Intell., 2015)

Computer-Aided Diagnosis of Mammographic Masses Using Scalable Image Retrieval. - Menglin Jiang; Shaoting Zhang 001; Hongsheng Li 001; Dimitris N. Metaxas (IEEE Trans. Biomed. Eng., 2015)

Is Interactional Dissynchrony a Clue to Deception? Insights From Automated Analysis of Nonverbal Visual Cues. - Xiang Yu 002; Shaoting Zhang 001; Zhennan Yan; Fei Yang 001; Junzhou Huang; Norah E. Dunbar; Matthew L. Jensen; Judee K. Burgoon; Dimitris N. Metaxas (IEEE Trans. Cybern., 2015)

Robust Low-Dose CT Perfusion Deconvolution via Tensor Total-Variation Regularization. - Ruogu Fang; Shaoting Zhang 001; Tsuhan Chen; Pina C. Sanelli (IEEE Trans. Medical Imaging, 2015)

Towards Large-Scale Histopathological Image Analysis: Hashing-Based Image Retrieval. - Xiaofan Zhang 002; Wei Liu 005; Murat Dundar; Sunil Badve; Shaoting Zhang 001 (IEEE Trans. Medical Imaging, 2015)

Multispectral Deep Neural Networks for Pedestrian Detection. - Jingjing Liu 001; Shaoting Zhang 001; Shu Wang; Dimitris N. Metaxas (BMVC, 2016)

SPDA-CNN: Unifying Semantic Part Detection and Abstraction for Fine-Grained Recognition. - Han Zhang 010; Tao Xu; Mohamed Elhoseiny; Xiaolei Huang 001; Shaoting Zhang 001; Ahmed M. Elgammal; Dimitris N. Metaxas (CVPR, 2016)

Embedding Label Structures for Fine-Grained Feature Representation. - Xiaofan Zhang 002; Feng Zhou 002; Yuanqing Lin; Shaoting Zhang 001 (CVPR, 2016)

Efficient k-Support-Norm Regularized Minimization via Fully Corrective Frank-Wolfe Method. - Bo Liu 005; Xiao-Tong Yuan; Shaoting Zhang 001; Qingshan Liu 001; Dimitris N. Metaxas (IJCAI, 2016)

Visual Tracking with Reliable Memories. - Shu Wang; Shaoting Zhang 001; Wei Liu 005; Dimitris N. Metaxas (IJCAI, 2016)

Nonlinear Hierarchical Part-Based Regression for Unconstrained Face Alignment. - Xiang Yu 002; Zhe Lin 001; Shaoting Zhang 001; Dimitris N. Metaxas (IJCAI, 2016)

Maximum inner product search for morphological retrieval of large-scale neuron data. - Zhongyu Li 002; Fumin Shen; Ruogu Fang; Sailesh Conjeti; Amin Katouzian; Shaoting Zhang 001 (ISBI, 2016)

Mammographic Mass Segmentation with Online Learned Shape and Appearance Priors. - Menglin Jiang; Shaoting Zhang 001; Yuanjie Zheng; Dimitris N. Metaxas (MICCAI (2), 2016)

Recognizing End-Diastole and End-Systole Frames via Deep Temporal Regression Network. - Bin Kong 001; Yiqiang Zhan; Min C. Shin; Thomas Denny; Shaoting Zhang 001 (MICCAI (3), 2016)

Multimodal Deep Learning for Cervical Dysplasia Diagnosis. - Tao Xu; Han Zhang 010; Xiaolei Huang 001; Shaoting Zhang 001; Dimitris N. Metaxas (MICCAI (2), 2016)

Visual Tracking via Reliable Memories. - Shu Wang; Shaoting Zhang 001; Wei Liu 005; Dimitris N. Metaxas (CoRR, 2016)

StackGAN: Text to Photo-realistic Image Synthesis with Stacked Generative Adversarial Networks. - Han Zhang 010; Tao Xu; Hongsheng Li 001; Shaoting Zhang 001; Xiaolei Huang 001; Xiaogang Wang 001; Dimitris N. Metaxas (CoRR, 2016)

A detection-driven and sparsity-constrained deformable model for fascia lata labeling and thigh inter-muscular adipose quantification. - Chaowei Tan; Kang Li 004; Zhennan Yan; Dong Yang 005; Shaoting Zhang 001; Hui Jing Yu; Klaus Engelke; Colin Miller; Dimitris N. Metaxas (Comput. Vis. Image Underst., 2016)

Scalable histopathological image analysis via supervised hashing with multiple features. - Menglin Jiang; Shaoting Zhang 001; Junzhou Huang; Lin Yang 002; Dimitris N. Metaxas (Medical Image Anal., 2016)

Large-Scale medical image analytics: Recent methodologies, applications and Future directions. - Shaoting Zhang 001; Dimitris N. Metaxas (Medical Image Anal., 2016)

Neuron-Miner: An Advanced Tool for Morphological Search and Retrieval in Neuroscientific Image Databases. - Sailesh Conjeti; Sepideh Mesbah; Mohammadreza Negahdar; Philipp L. Rautenberg; Shaoting Zhang 001; Nassir Navab; Amin Katouzian (Neuroinformatics, 2016)

Face Landmark Fitting via Optimized Part Mixtures and Cascaded Deformable Model. - Xiang Yu 002; Junzhou Huang; Shaoting Zhang 001; Dimitris N. Metaxas (IEEE Trans. Pattern Anal. Mach. Intell., 2016)

Fusing Heterogeneous Features From Stacked Sparse Autoencoder for Histopathological Image Analysis. - Xiaofan Zhang 002; Hang Dou; Tao Ju; Jun Xu 005; Shaoting Zhang 001 (IEEE J. Biomed. Health Informatics, 2016)

Multi-Instance Deep Learning: Discover Discriminative Local Anatomies for Bodypart Recognition. - Zhennan Yan; Yiqiang Zhan; Zhigang Peng; Shu Liao; Yoshihisa Shinagawa; Shaoting Zhang 001; Dimitris N. Metaxas; Xiang Sean Zhou (IEEE Trans. Medical Imaging, 2016)

Multi-Instance Multi-Stage Deep Learning for Medical Image Recognition. - Zhennan Yan; Yiqiang Zhan; Shaoting Zhang 001; Dimitris N. Metaxas; Xiang Sean Zhou (Deep Learning for Medical Image Analysis, 2017)

Cancer Metastasis Detection via Spatially Structured Deep Network. - Bin Kong 001; Xin Wang 045; Zhongyu Li 002; Qi Song 001; Shaoting Zhang 001 (IPMI, 2017)

Optimal Topological Cycles and Their Application in Cardiac Trabeculae Restoration. - Pengxiang Wu; Chao Chen 012; Yusu Wang 001; Shaoting Zhang 001; Changhe Yuan; Zhen Qian; Dimitris N. Metaxas; Leon Axel (IPMI, 2017)

Interactive Reinforcement Learning for Object Grounding via Self-Talking. - Yan Zhu 009; Shaoting Zhang 001; Dimitris N. Metaxas (CoRR, 2017)

Choroid segmentation from Optical Coherence Tomography with graph-edge weights learned from deep convolutional neural networks. - Xiaodan Sui; Yuanjie Zheng; Benzheng Wei; Hongsheng Bi; Jianfeng Wu; Xuemei Pan; Yilong Yin; Shaoting Zhang 001 (Neurocomputing, 2017)

Guest Editorial: Special issue on advances in computing techniques for big medical image data. - Yuanjie Zheng; Shaoting Zhang 001; Junzhou Huang; Weidong Cai 001 (Neurocomputing, 2017)

Indexing and mining large-scale neuron databases using maximum inner product search. - Zhongyu Li 002; Ruogu Fang; Fumin Shen; Amin Katouzian; Shaoting Zhang 001 (Pattern Recognit., 2017)

Scalable Mammogram Retrieval Using Composite Anchor Graph Hashing With Iterative Quantization. - Jingjing Liu 001; Shaoting Zhang 001; Wei Liu 005; Cheng Deng; Yuanjie Zheng; Dimitris N. Metaxas (IEEE Trans. Circuits Syst. Video Technol., 2017)

Latent Max-Margin Multitask Learning With Skelets for 3-D Action Recognition. - Yanhua Yang; Cheng Deng; Dapeng Tao; Shaoting Zhang 001; Wei Liu 005; Xinbo Gao 001 (IEEE Trans. Cybern., 2017)

Robust Cell Detection and Segmentation in Histopathological Images Using Sparse Reconstruction and Stacked Denoising Autoencoders. - Hai Su; Fuyong Xing; Xiangfei Kong; Yuanpu Xie; Shaoting Zhang 001; Lin Yang 002 (Deep Learning and Convolutional Neural Networks for Medical Image Computing, 2017)

Quantized Densely Connected U-Nets for Efficient Landmark Localization. - Zhiqiang Tang 001; Xi Peng 005; Shijie Geng; Lingfei Wu 001; Shaoting Zhang 001; Dimitris N. Metaxas (ECCV (3), 2018)

CR-GAN: Learning Complete Representations for Multi-view Generation. - Yu Tian 003; Xi Peng 005; Long Zhao 003; Shaoting Zhang 001; Dimitris N. Metaxas (IJCAI, 2018)

Deep feature representation for the computational analytics of 3D neuronal morphology. - Zhongyu Li 002; Chaowei Fang; Shaoting Zhang 001 (ISBI, 2018)

Invasive Cancer Detection Utilizing Compressed Convolutional Neural Network and Transfer Learning. - Bin Kong 001; Shanhui Sun; Xin Wang 045; Qi Song 001; Shaoting Zhang 001 (MICCAI (2), 2018)

Toward Personalized Modeling: Incremental and Ensemble Alignment for Sequential Faces in the Wild. - Xi Peng 005; Shaoting Zhang 001; Yang Yu 010; Dimitris N. Metaxas (Int. J. Comput. Vis., 2018)

Large-scale retrieval for medical image analytics: A comprehensive review. - Zhongyu Li 002; Xiaofan Zhang 002; Henning Müller; Shaoting Zhang 001 (Medical Image Anal., 2018)

Large-scale Exploration of Neuronal Morphologies Using Deep Learning and Augmented Reality. - Zhongyu Li 002; Erik Butler; Kang Li 004; Aidong Lu; Shuiwang Ji; Shaoting Zhang 001 (Neuroinformatics, 2018)

Global and Local Multi-scale Feature Fusion Enhancement for Brain Tumor Segmentation and Pancreas Segmentation. - Huan Wang 015; Guotai Wang; Zijian Liu; Shaoting Zhang 001 (BrainLes@MICCAI (1), 2019)

Learning Hierarchical and Shared Features for Improving 3D Neuron Reconstruction. - Hao Yuan 001; Na Zou 001; Shaoting Zhang 001; Hanchuan Peng; Shuiwang Ji (ICDM, 2019)

Residual Attention Based Network for Hand Bone Age Assessment. - Eric Wu; Bin Kong 001; Xin Wang 045; Junjie Bai; Yi Lu 019; Feng Gao; Shaoting Zhang 001; Kunlin Cao; Qi Song 001; Siwei Lyu; Youbing Yin (ISBI, 2019)

ImWeb: cross-platform immersive web browsing for online 3D neuron database exploration. - Willis Fulmer; Tahir Mahmood 004; Zhongyu Li 002; Shaoting Zhang 001; Jian Huang 007; Aidong Lu (IUI, 2019)

DeepIGeoS-V2: Deep Interactive Segmentation of Multiple Organs from Head and Neck Images with Lightweight CNNs. - Wenhui Lei; Huan Wang 015; Ran Gu; Shichuan Zhang; Shaoting Zhang 001; Guotai Wang (LABELS/HAL-MICCAI/CuRIOUS@MICCAI, 2019)

CFEA: Collaborative Feature Ensembling Adaptation for Domain Adaptation in Unsupervised Optic Disc and Cup Segmentation. - Peng Liu 037; Bin Kong 001; Zhongyu Li 002; Shaoting Zhang 001; Ruogu Fang (MICCAI (5), 2019)

Collaborative Multi-agent Learning for MR Knee Articular Cartilage Segmentation. - Chaowei Tan; Zhennan Yan; Shaoting Zhang 001; Kang Li 004; Dimitris N. Metaxas (MICCAI (2), 2019)

Automatic Segmentation of Vestibular Schwannoma from T2-Weighted MRI by Deep Spatial Attention with Hardness-Weighted Loss. - Guotai Wang; Jonathan Shapey; Wenqi Li 001; Reuben Dorent; Alex Demitriadis; Sotirios Bisdas; Ian Paddick; Robert Bradford; Shaoting Zhang 001; Sébastien Ourselin; Tom Vercauteren (MICCAI (2), 2019)

Automated Segmentation of Skin Lesion Based on Pyramid Attention Network. - Huan Wang 015; Guotai Wang; Ze Sheng; Shaoting Zhang 001 (MLMI@MICCAI, 2019)

High- and Low-Level Feature Enhancement for Medical Image Segmentation. - Huan Wang 015; Guotai Wang; Zhihan Xu; Wenhui Lei; Shaoting Zhang 001 (MLMI@MICCAI, 2019)

Computational modeling of cellular structures using conditional deep generative networks. - Hao Yuan 001; Lei Cai; Zhengyang Wang; Xia Hu 001; Shaoting Zhang 001; Shuiwang Ji (Bioinform., 2019)

Attention-driven Tree-structured Convolutional LSTM for High Dimensional Data Understanding. - Bin Kong 001; Xin Wang 045; Junjie Bai; Yi Lu 019; Feng Gao; Kunlin Cao; Qi Song 001; Shaoting Zhang 001; Siwei Lyu; Youbing Yin (CoRR, 2019)

StackGAN++: Realistic Image Synthesis with Stacked Generative Adversarial Networks. - Han Zhang 010; Tao Xu; Hongsheng Li 001; Shaoting Zhang 001; Xiaogang Wang 001; Xiaolei Huang 001; Dimitris N. Metaxas (IEEE Trans. Pattern Anal. Mach. Intell., 2019)

Predicting 3-D Lower Back Joint Load in Lifting: A Deep Pose Estimation Approach. - Rahil Mehrizi; Xi Peng 005; Dimitris N. Metaxas; Xu Xu; Shaoting Zhang 001; Kang Li 004 (IEEE Trans. Hum. Mach. Syst., 2019)

Feature-Enhanced Graph Networks for Genetic Mutational Prediction Using Histopathological Images in Colon Cancer. - Kexin Ding; Qiao Liu 008; Edward Lee; Mu Zhou; Aidong Lu; Shaoting Zhang 001 (MICCAI (2), 2020)

Multi-organ Segmentation via Co-training Weight-Averaged Models from Few-Organ Datasets. - Rui Huang 001; Yuanjie Zheng; Zhiqiang Hu; Shaoting Zhang 001; Hongsheng Li 001 (MICCAI (4), 2020)

UXNet: Searching Multi-level Feature Aggregation for 3D Medical Image Segmentation. - Yuanfeng Ji; Ruimao Zhang; Zhen Li 026; Jiamin Ren; Shaoting Zhang 001; Ping Luo 002 (MICCAI (1), 2020)

NAS-SCAM: Neural Architecture Search-Based Spatial and Channel Joint Attention Module for Nuclei Semantic Segmentation and Classification. - Zuhao Liu 002; Huan Wang 015; Shaoting Zhang 001; Guotai Wang; Jin Qi (MICCAI (1), 2020)

CPM-Net: A 3D Center-Points Matching Network for Pulmonary Nodule Detection in CT Scans. - Tao Song 002; Jieneng Chen; Xiangde Luo; Yechong Huang; Xinglong Liu; Ning Huang; Yinan Chen; Zhaoxiang Ye; Huaqiang Sheng; Shaoting Zhang 001; Guotai Wang (MICCAI (6), 2020)

Uncertainty-Guided Efficient Interactive Refinement of Fetal Brain Segmentation from Stacks of MRI Slices. - Guotai Wang; Michael Aertsen; Jan Deprest; Sébastien Ourselin; Tom Vercauteren; Shaoting Zhang 001 (MICCAI (4), 2020)

SenseCare: A Research Platform for Medical Image Informatics and Interactive 3D Visualization. - Qi Duan; Guotai Wang; Rui Wang; Chao Fu; Xinjun Li; Maoliang Gong; Xinglong Liu; Qing Xia 002; Xiaodi Huang; Zhiqiang Hu; Ning Huang; Shaoting Zhang 001 (CoRR, 2020)

Semi-supervised Medical Image Segmentation through Dual-task Consistency. - Xiangde Luo; Jieneng Chen; Tao Song 002; Yinan Chen; Guotai Wang; Shaoting Zhang 001 (CoRR, 2020)

Learning Euler's Elastica Model for Medical Image Segmentation. - Xu Chen 030; Xiangde Luo; Yitian Zhao; Shaoting Zhang 001; Guotai Wang; Yalin Zheng (CoRR, 2020)

Semi-supervised Segmentation via Uncertainty Rectified Pyramid Consistency and Its Application to Gross Target Volume of Nasopharyngeal Carcinoma. - Xiangde Luo; Wenjun Liao; Jieneng Chen; Tao Song 002; Yinan Chen; Guotai Wang; Shaoting Zhang 001 (CoRR, 2020)

One-Shot Object Localization in Medical Images based on Relative Position Regression. - Wenhui Lei; Wei Xu 046; Ran Gu; Hao Fu; Shaoting Zhang 001; Guotai Wang (CoRR, 2020)

Multi-modal AsynDGAN: Learn From Distributed Medical Image Data without Sharing Private Information. - Qi Chang; Zhennan Yan; Lohendran Baskaran; Hui Qu; Yikai Zhang 003; Tong Zhang 001; Shaoting Zhang 001; Dimitris N. Metaxas (CoRR, 2020)

Weakly supervised vessel segmentation in X-ray angiograms by self-paced learning from noisy labels with suggestive annotation. - Jingyang Zhang; Guotai Wang; Hongzhi Xie; Shuyang Zhang; Ning Huang; Shaoting Zhang 001; Lixu Gu (Neurocomputing, 2020)

Automatic ischemic stroke lesion segmentation from computed tomography perfusion images by image synthesis and attention-based deep neural networks. - Guotai Wang; Tao Song 002; Qiang Dong; Mei Cui; Ning Huang; Shaoting Zhang 001 (Medical Image Anal., 2020)

Weakly Supervised Deep Nuclei Segmentation Using Partial Points Annotation in Histopathology Images. - Hui Qu; Pengxiang Wu; Qiaoying Huang; Jingru Yi; Zhennan Yan; Kang Li 004; Gregory M. Riedlinger; Subhajyoti De; Shaoting Zhang 001; Dimitris N. Metaxas (IEEE Trans. Medical Imaging, 2020)

A Noise-Robust Framework for Automatic Segmentation of COVID-19 Pneumonia Lesions From CT Images. - Guotai Wang; Xinglong Liu; Chaoping Li; Zhiyong Xu; Jiugen Ruan; Haifeng Zhu; Tao Meng; Kang Li 004; Ning Huang; Shaoting Zhang 001 (IEEE Trans. Medical Imaging, 2020)

A Denoising Self-supervised Approach for COVID-19 Pneumonia Lesion Segmentation with Limited Annotated CT Images. - Yibo Gao; Huan Wang 015; Xinglong Liu; Ning Huang; Guotai Wang; Shaoting Zhang 001 (EMBC, 2021)

Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction. - Guofeng Lv; Zhiqiang Hu; Yanguang Bi; Shaoting Zhang 001 (IJCAI, 2021)

Domain Composition and Attention for Unseen-Domain Generalizable Medical Image Segmentation. - Ran Gu; Jingyang Zhang; Rui Huang 001; Wenhui Lei; Guotai Wang; Shaoting Zhang 001 (MICCAI (3), 2021)

Fully Test-Time Adaptation for Image Segmentation. - Minhao Hu; Tao Song 002; Yujun Gu; Xiangde Luo; Jieneng Chen; Yinan Chen; Ya Zhang 002; Shaoting Zhang 001 (MICCAI (3), 2021)

Multi-compound Transformer for Accurate Biomedical Image Segmentation. - Yuanfeng Ji; Ruimao Zhang; Huijie Wang; Zhen Li 026; Lingyun Wu; Shaoting Zhang 001; Ping Luo 002 (MICCAI (1), 2021)

Contrastive Learning of Relative Position Regression for One-Shot Object Localization in 3D Medical Images. - Wenhui Lei; Wei Xu 046; Ran Gu; Hao Fu; Shaoting Zhang 001; Shichuan Zhang; Guotai Wang (MICCAI (2), 2021)

Hybrid Supervision Learning for Pathology Whole Slide Image Classification. - Jiahui Li 005; Wen Chen 022; Xiaodi Huang; Shuang Yang; Zhiqiang Hu; Qi Duan; Dimitris N. Metaxas; Hongsheng Li 001; Shaoting Zhang 001 (MICCAI (8), 2021)

A Deep Reinforced Tree-Traversal Agent for Coronary Artery Centerline Extraction. - Zhuowei Li 002; Qing Xia 002; Zhiqiang Hu; Wenji Wang; Lijian Xu; Shaoting Zhang 001 (MICCAI (5), 2021)

Efficient Semi-supervised Gross Target Volume of Nasopharyngeal Carcinoma Segmentation via Uncertainty Rectified Pyramid Consistency. - Xiangde Luo; Wenjun Liao; Jieneng Chen; Tao Song 002; Yinan Chen; Shichuan Zhang; Nianyong Chen; Guotai Wang; Shaoting Zhang 001 (MICCAI (2), 2021)

Multi-frame Collaboration for Effective Endoscopic Video Polyp Detection via Spatial-Temporal Feature Transformation. - Lingyun Wu; Zhiqiang Hu; Yuanfeng Ji; Ping Luo 002; Shaoting Zhang 001 (MICCAI (5), 2021)

MRI-based nomogram analysis: recognition of anterior peritoneal reflection and its relationship to rectal cancers. - Shaoting Zhang 001; Fangying Chen; Xiaolu Ma; Minjie Wang; Guanyu Yu; Fu Shen; Xianhua Gao; Jianping Lu (BMC Medical Imaging, 2021)

Self-Ensembling Contrastive Learning for Semi-Supervised Medical Image Segmentation. - Jinxi Xiang; Zhuowei Li 002; Wenji Wang; Qing Xia 002; Shaoting Zhang 001 (CoRR, 2021)

Mixed Supervision Learning for Whole Slide Image Classification. - Jiahui Li 005; Wen Chen 022; Xiaodi Huang; Zhiqiang Hu; Qi Duan; Hongsheng Li 001; Dimitris N. Metaxas; Shaoting Zhang 001 (CoRR, 2021)

WORD: Revisiting Organs Segmentation in the Whole Abdominal Region. - Xiangde Luo; Wenjun Liao; Jianghong Xiao; Tao Song 002; Xiaofan Zhang 002; Kang Li 004; Guotai Wang; Shaoting Zhang 001 (CoRR, 2021)

One-shot Weakly-Supervised Segmentation in Medical Images. - Wenhui Lei; Qi Su; Ran Gu; Na Wang; Xinglong Liu; Guotai Wang; Xiaofan Zhang 002; Shaoting Zhang 001 (CoRR, 2021)

Automatic segmentation of organs-at-risk from head-and-neck CT using separable convolutional neural network with hard-region-weighted loss. - Wenhui Lei; Haochen Mei; Zhengwentai Sun; Shan Ye; Ran Gu; Huan Wang 015; Rui Huang 001; Shichuan Zhang; Shaoting Zhang 001; Guotai Wang (Neurocomputing, 2021)

Guest editorial: Deep learning for medical image analysis. - Hongsheng Li 001; Shaoting Zhang 001; Dimitris N. Metaxas (Neurocomputing, 2021)

MIDeepSeg: Minimally interactive segmentation of unseen objects from medical images using deep learning. - Xiangde Luo; Guotai Wang; Tao Song 002; Jingyang Zhang; Michael Aertsen; Jan Deprest; Sébastien Ourselin; Tom Vercauteren; Shaoting Zhang 001 (Medical Image Anal., 2021)

Surgical planning of pelvic tumor using multi-view CNN with relation-context representation learning. - Yang Qu; Xiaomin Li; Zhennan Yan; Liang Zhao 018; Lichi Zhang; Chang Liu; Shuaining Xie; Kang Li 004; Dimitris N. Metaxas; Wen Wu; Yongqiang Hao; Kerong Dai; et al. (Medical Image Anal., 2021)

CA-Net: Comprehensive Attention Convolutional Neural Networks for Explainable Medical Image Segmentation. - Ran Gu; Guotai Wang; Tao Song 002; Rui Huang 001; Michael Aertsen; Jan Deprest; Sébastien Ourselin; Tom Vercauteren; Shaoting Zhang 001 (IEEE Trans. Medical Imaging, 2021)

Annotation-Efficient Learning for Medical Image Segmentation Based on Noisy Pseudo Labels and Adversarial Learning. - Lu Wang; Dong Guo; Guotai Wang; Shaoting Zhang 001 (IEEE Trans. Medical Imaging, 2021)

Few-Shot Learning by a Cascaded Framework With Shape-Constrained Pseudo Label Assessment for Whole Heart Segmentation. - Wenji Wang; Qing Xia 002; Zhiqiang Hu; Zhennan Yan; Zhuowei Li 002; Yang Wu; Ning Huang; Yue Gao 002; Dimitris N. Metaxas; Shaoting Zhang 001 (IEEE Trans. Medical Imaging, 2021)

Efficient Federated Tumor Segmentation via Parameter Distance Weighted Aggregation and Client Pruning. - Meirui Jiang; Hongzheng Yang; Xiaofan Zhang 002; Shaoting Zhang 001; Qi Dou 001 (BrainLes@MICCAI (2), 2022)

Towards Self-Supervised and Weight-preserving Neural Architecture Search. - Zhuowei Li 002; Yibo Gao; Zhenzhou Zha; Zhiqiang Hu; Qing Xia 002; Shaoting Zhang 001; Dimitris N. Metaxas (ECCV Workshops (4), 2022)

FPL-UDA: Filtered Pseudo Label-Based Unsupervised Cross-Modality Adaptation for Vestibular Schwannoma Segmentation. - Jianghao Wu 001; Ran Gu; Guiming Dong; Guotai Wang; Shaoting Zhang 001 (ISBI, 2022)

AANet: Artery-Aware Network for Pulmonary Embolism Detection in CTPA Images. - Jia Guo; Xinglong Liu; Yinan Chen; Shaoting Zhang 001; Guangyu Tao; Hong Yu; Huiyuan Zhu; Wenhui Lei; Huiqi Li; Na Wang (MICCAI (1), 2022)

Scribble-Supervised Medical Image Segmentation via Dual-Branch Network and Dynamically Mixed Pseudo Labels Supervision. - Xiangde Luo; Minhao Hu; Wenjun Liao; Shuwei Zhai; Tao Song 002; Guotai Wang; Shaoting Zhang 001 (MICCAI (1), 2022)

Semi-Supervised Medical Image Segmentation via Cross Teaching between CNN and Transformer. - Xiangde Luo; Minhao Hu; Tao Song 002; Guotai Wang; Shaoting Zhang 001 (MIDL, 2022)

Robust Cardiac MRI Segmentation with Data-Centric Models to Improve Performance via Intensive Pre-training and Augmentation. - Shizhan Gong; Weitao Lu; Jize Xie; Xiaofan Zhang 002; Shaoting Zhang 001; Qi Dou 001 (STACOM@MICCAI, 2022)

Contrastive and Selective Hidden Embeddings for Medical Image Segmentation. - Zhuowei Li 002; Zihao Liu; Zhiqiang Hu; Qing Xia 002; Ruiqin Xiong; Shaoting Zhang 001; Dimitris N. Metaxas; Tingting Jiang 001 (CoRR, 2022)

Graph Convolutional Networks for Multi-modality Medical Imaging: Methods, Architectures, and Clinical Applications. - Kexin Ding; Mu Zhou; Zichen Wang; Qiao Liu 008; Corey W. Arnold; Shaoting Zhang 001; Dimitris N. Metaxas (CoRR, 2022)

Contrastive Domain Disentanglement for Generalizable Medical Image Segmentation. - Ran Gu; Jiangshan Lu; Jingyang Zhang; Wenhui Lei; Xiaofan Zhang 002; Guotai Wang; Shaoting Zhang 001 (CoRR, 2022)

DigestPath: A benchmark dataset with challenge review for the pathological detection and segmentation of digestive-system. - Qian Da; Xiaodi Huang; Zhongyu Li 002; Yanfei Zuo; Chenbin Zhang; Jingxin Liu; Wen Chen 001; Jiahui Li 005; Dou Xu; Zhiqiang Hu; Hongmei Yi; Yan Guo; et al. (Medical Image Anal., 2022)

Thyroid nodule segmentation and classification in ultrasound images through intra- and inter-task consistent learning. - Qingbo Kang; Qicheng Lao; Yiyue Li; Zekun Jiang; Yue Qiu; Shaoting Zhang 001; Kang Li 004 (Medical Image Anal., 2022)

WORD: A large scale dataset, benchmark and clinical applicable study for abdominal organ segmentation from CT image. - Xiangde Luo; Wenjun Liao; Jianghong Xiao; Jieneng Chen; Tao Song 002; Xiaofan Zhang 002; Kang Li 004; Dimitris N. Metaxas; Guotai Wang; Shaoting Zhang 001 (Medical Image Anal., 2022)

SCPM-Net: An anchor-free 3D lung nodule detection network using sphere representation and center points matching. - Xiangde Luo; Tao Song 002; Guotai Wang; Jieneng Chen; Yinan Chen; Kang Li 004; Dimitris N. Metaxas; Shaoting Zhang 001 (Medical Image Anal., 2022)

Semi-supervised medical image segmentation via uncertainty rectified pyramid consistency. - Xiangde Luo; Guotai Wang; Wenjun Liao; Jieneng Chen; Tao Song 002; Yinan Chen; Shichuan Zhang; Dimitris N. Metaxas; Shaoting Zhang 001 (Medical Image Anal., 2022)

SymReg-GAN: Symmetric Image Registration With Generative Adversarial Networks. - Yuanjie Zheng; Xiaodan Sui; Yanyun Jiang; Tongtong Che; Shaoting Zhang 001; Jie Yang 002; Hongsheng Li 001 (IEEE Trans. Pattern Anal. Mach. Intell., 2022)

HMRNet: High and Multi-Resolution Network With Bidirectional Feature Calibration for Brain Structure Segmentation in Radiotherapy. - Hao Fu; Guotai Wang; Wenhui Lei; Wei Xu 046; Qianfei Zhao; Shichuan Zhang; Kang Li 004; Shaoting Zhang 001 (IEEE J. Biomed. Health Informatics, 2022)

Learning COVID-19 Pneumonia Lesion Segmentation From Imperfect Annotations via Divergence-Aware Selective Training. - Shuojue Yang; Guotai Wang; Hui Sun; Xiangde Luo; Peng Sun; Kang Li 004; Qijun Wang; Shaoting Zhang 001 (IEEE J. Biomed. Health Informatics, 2022)

Contrastive and Selective Hidden Embeddings for Medical Image Segmentation. - Zihao Liu; Zhuowei Li 002; Zhiqiang Hu; Qing Xia 002; Ruiqin Xiong; Shaoting Zhang 001; Tingting Jiang 001 (IEEE Trans. Medical Imaging, 2022)

Semi-Supervised Segmentation of Radiation-Induced Pulmonary Fibrosis From Lung CT Scans With Multi-Scale Guided Dense Attention. - Guotai Wang; Shuwei Zhai; Giovanni Lasio; Baoshe Zhang; Byong Yi; Shifeng Chen; Thomas J. Macvittie; Dimitris N. Metaxas; Jinghao Zhou; Shaoting Zhang 001 (IEEE Trans. Medical Imaging, 2022)

Predicting unseen antibodies' neutralizability via adaptive graph neural networks. - Jie Zhang 122; Yishan Du; Pengfei Zhou; Jinru Ding; Shuai Xia; Qian Wang; Feiyang Chen; Mu Zhou; Xuemei Zhang; Weifeng Wang; Hongyan Wu; Lu Lu; et al. (Nat. Mac. Intell., 2022)

MidMed: Towards Mixed-Type Dialogues for Medical Consultation. - Xiaoming Shi; Zeming Liu; Chuan Wang 002; Haitao Leng; Kui Xue; Xiaofan Zhang 002; Shaoting Zhang 001 (ACL (1), 2023)

Alleviating Exposure Bias via Multi-level Contrastive Learning and Deviation Simulation in Abstractive Summarization. - Jiawen Xie; Qi Su; Shaoting Zhang 001; Xiaofan Zhang 002 (ACL (Findings), 2023)

KiUT: Knowledge-injected U-Transformer for Radiology Report Generation. - Zhongzhen Huang; Xiaofan Zhang 002; Shaoting Zhang 001 (CVPR, 2023)

Automatic Lung Cancer Subtypes Classification on CT Images with Self-generated Multi-modality Hybrid Features. - Gege Ma; Yuan Jin; Jianhu Pan; Shaoting Zhang 001; Dimitris N. Metaxas; Wentao Zhu 002 (EMBC, 2023)

Domain-Adversarial Transformer Network for Multiphase Liver Tumor Segmentation. - Yangfan Ni; Geng Chen 001; Zhan Feng; Heng Cui 001; Dimitris N. Metaxas; Shaoting Zhang 001; Wentao Zhu 002 (EMBC, 2023)

UPL-TTA: Uncertainty-Aware Pseudo Label Guided Fully Test Time Adaptation for Fetal Brain Segmentation. - Jianghao Wu 001; Ran Gu; Tao Lu; Shaoting Zhang 001; Guotai Wang (IPMI, 2023)

Pathology-and-Genomics Multimodal Transformer for Survival Outcome Prediction. - Kexin Ding; Mu Zhou; Dimitris N. Metaxas; Shaoting Zhang 001 (MICCAI (6), 2023)

UM-CAM: Uncertainty-weighted Multi-resolution Class Activation Maps for Weakly-supervised Fetal Brain Segmentation. - Jia Fu; Tao Lu; Shaoting Zhang 001; Guotai Wang (MICCAI (7), 2023)

Scribble-Based 3D Multiple Abdominal Organ Segmentation via Triple-Branch Multi-Dilated Network with Pixel- and Class-Wise Consistency. - Meng Han; Xiangde Luo; Wenjun Liao; Shichuan Zhang; Shaoting Zhang 001; Guotai Wang (MICCAI (7), 2023)

ScribSD: Scribble-Supervised Fetal MRI Segmentation Based on Simultaneous Feature and Prediction Self-distillation. - Yijie Qu; Qianfei Zhao; Linda Wei; Tao Lu; Shaoting Zhang 001; Guotai Wang (MILLanD@MICCAI, 2023)

Foundation Model for Endoscopy Video Analysis via Large-Scale Self-supervised Pre-train. - Zhao Wang 006; Chang Liu; Shaoting Zhang 001; Qi Dou 001 (MICCAI (9), 2023)

Text-Guided Foundation Model Adaptation for Pathological Image Classification. - Yunkun Zhang; Jin Gao; Mu Zhou; Xiaosong Wang 001; Yu Qiao 001; Shaoting Zhang 001; Dequan Wang (MICCAI (5), 2023)

Semi-supervised Pathological Image Segmentation via Cross Distillation of Multiple Attentions. - Lanfeng Zhong; Xin Liao; Shaoting Zhang 001; Guotai Wang (MICCAI (6), 2023)

Voxel2Hemodynamics: An End-to-End Deep Learning Method for Predicting Coronary Artery Hemodynamics. - Ziyu Ni; Linda Wei; Lijian Xu; Qing Xia 002; Hongsheng Li 001; Shaoting Zhang 001; Dimitris N. Metaxas (STACOM@MICCAI, 2023)

Geometry-Based End-to-End Segmentation of Coronary Artery in Computed Tomography Angiography. - Xiaoyu Yang 007; Lijian Xu; Simon Yu; Qing Xia 002; Hongsheng Li 001; Shaoting Zhang 001 (TML4H, 2023)

Towards General Purpose Medical AI: Continual Learning Medical Foundation Model. - Huahui Yi; Ziyuan Qin 001; Qicheng Lao; Wei Xu 046; Zekun Jiang; Dequan Wang; Shaoting Zhang 001; Kang Li 004 (CoRR, 2023)

STU-Net: Scalable and Transferable Medical Image Segmentation Models Empowered by Large-Scale Supervised Pre-training. - Ziyan Huang; Haoyu Wang 010; Zhongying Deng; Jin Ye 002; Yanzhou Su; Hui Sun; Junjun He; Yun Gu; Lixu Gu; Shaoting Zhang 001; Yu Qiao 001 (CoRR, 2023)

SAM on Medical Images: A Comprehensive Study on Three Prompt Modes. - Dongjie Cheng; Ziyuan Qin 001; Zekun Jiang; Shaoting Zhang 001; Qicheng Lao; Kang Li 004 (CoRR, 2023)

Segmentation and Vascular Vectorization for Coronary Artery by Geometry-based Cascaded Neural Network. - Xiaoyu Yang 007; Lijian Xu; Simon Yu; Qing Xia 002; Hongsheng Li 001; Shaoting Zhang 001 (CoRR, 2023)

MedGPTEval: A Dataset and Benchmark to Evaluate Responses of Large Language Models in Medicine. - Jie Xu; Lu Lu; Sen Yang; Bilin Liang; Xinwei Peng; Jiali Pang; Jinru Ding; Xiaoming Shi; Lingrui Yang; Huan Song; Kang Li 004; Xin Sun; et al. (CoRR, 2023)

ConES: Concept Embedding Search for Parameter Efficient Tuning Large Vision Language Models. - Huahui Yi; Ziyuan Qin 001; Wei Xu 046; Miaotian Guo; Kun Wang; Shaoting Zhang 001; Kang Li 004; Qicheng Lao (CoRR, 2023)

Voxel2Hemodynamics: An End-to-end Deep Learning Method for Predicting Coronary Artery Hemodynamics. - Ziyu Ni; Linda Wei; Lijian Xu; Simon Yu; Qing Xia 002; Hongsheng Li 001; Shaoting Zhang 001 (CoRR, 2023)

Training Like a Medical Resident: Universal Medical Image Segmentation via Context Prior Learning. - Yunhe Gao; Zhuowei Li 002; Di Liu 003; Mu Zhou; Shaoting Zhang 001; Dimitris N. Metaxas (CoRR, 2023)

MedFMC: A Real-world Dataset and Benchmark For Foundation Model Adaptation in Medical Image Classification. - Dequan Wang; Xiaosong Wang 001; Lilong Wang; Mengzhang Li; Qian Da; Xiaoqiang Liu; Xiangyu Gao; Jun Shen; Junjun He; Tian Shen; Qi Duan; Jie Zhao 014; et al. (CoRR, 2023)

Exploring Data Redundancy in Real-world Image Classification through Data Selection. - Zhenyu Tang 005; Shaoting Zhang 001; Xiaosong Wang 001 (CoRR, 2023)

MedLSAM: Localize and Segment Anything Model for 3D Medical Images. - Wenhui Lei; Xu Wei; Xiaofan Zhang 002; Kang Li 004; Shaoting Zhang 001 (CoRR, 2023)

MIS-FM: 3D Medical Image Segmentation using Foundation Models Pretrained on a Large-Scale Unannotated Dataset. - Guotai Wang; Jianghao Wu 001; Xiangde Luo; Xinglong Liu; Kang Li 004; Shaoting Zhang 001 (CoRR, 2023)

LLM-Mini-CEX: Automatic Evaluation of Large Language Model for Diagnostic Conversation. - Xiaoming Shi; Jie Xu; Jinru Ding; Jiali Pang; Sichen Liu 005; Shuqing Luo; Xingwei Peng; Lu Lu; Haihong Yang; Mingtao Hu; Tong Ruan; Shaoting Zhang 001 (CoRR, 2023)

SAM-Med2D. - Junlong Cheng; Jin Ye 002; Zhongying Deng; Jianpin Chen; Tianbin Li; Haoyu Wang 010; Yanzhou Su; Ziyan Huang; Jilong Chen; Lei Jiang; Hui Sun; Junjun He; et al. (CoRR, 2023)

A-Eval: A Benchmark for Cross-Dataset Evaluation of Abdominal Multi-Organ Segmentation. - Ziyan Huang; Zhongying Deng; Jin Ye 002; Haoyu Wang 010; Yanzhou Su; Tianbin Li; Hui Sun; Junlong Cheng; Jianpin Chen; Junjun He; Yun Gu; Shaoting Zhang 001; et al. (CoRR, 2023)

UPL-SFDA: Uncertainty-aware Pseudo Label Guided Source-Free Domain Adaptation for Medical Image Segmentation. - Jianghao Wu 001; Guotai Wang; Ran Gu; Tao Lu; Yinan Chen; Wentao Zhu 001; Tom Vercauteren; Sébastien Ourselin; Shaoting Zhang 001 (CoRR, 2023)

SAM-Med3D. - Haoyu Wang 010; Sizheng Guo; Jin Ye 002; Zhongying Deng; Junlong Cheng; Tianbin Li; Jianpin Chen; Yanzhou Su; Ziyan Huang; Yiqing Shen 003; Bin Fu; Shaoting Zhang 001; et al. (CoRR, 2023)

Learning A Multi-Task Transformer Via Unified And Customized Instruction Tuning For Chest Radiograph Interpretation. - Lijian Xu; Ziyu Ni; Xinglong Liu; Xiaosong Wang 001; Hongsheng Li 001; Shaoting Zhang 001 (CoRR, 2023)

SA-Med2D-20M Dataset: Segment Anything in 2D Medical Imaging with 20 Million masks. - Jin Ye 002; Junlong Cheng; Jianpin Chen; Zhongying Deng; Tianbin Li; Haoyu Wang 010; Yanzhou Su; Ziyan Huang; Jilong Chen; Lei Jiang; Hui Sun; Min Zhu; et al. (CoRR, 2023)

ViLaM: A Vision-Language Model with Enhanced Visual Grounding and Generalization Capability. - Xiaoyu Yang 007; Lijian Xu; Hongsheng Li 001; Shaoting Zhang 001 (CoRR, 2023)

Self-supervised anomaly detection, staging and segmentation for retinal images. - Yiyue Li; Qicheng Lao; Qingbo Kang; Zekun Jiang; Shiyi Du; Shaoting Zhang 001; Kang Li 004 (Medical Image Anal., 2023)

Editorial for special issue on explainable and generalizable deep learning methods for medical image computing. - Guotai Wang; Shaoting Zhang 001; Sharon X. Huang; Tom Vercauteren; Dimitris N. Metaxas (Medical Image Anal., 2023)

Contrastive Semi-Supervised Learning for Domain Adaptive Segmentation Across Similar Anatomical Structures. - Ran Gu; Jingyang Zhang; Guotai Wang; Wenhui Lei; Tao Song 002; Xiaofan Zhang 002; Kang Li 004; Shaoting Zhang 001 (IEEE Trans. Medical Imaging, 2023)

PA-Seg: Learning From Point Annotations for 3D Medical Image Segmentation Using Contextual Regularization and Cross Knowledge Distillation. - Shuwei Zhai; Guotai Wang; Xiangde Luo; Qiang Yue; Kang Li 004; Shaoting Zhang 001 (IEEE Trans. Medical Imaging, 2023)

SAM-DTA: a sequence-agnostic model for drug-target binding affinity prediction. - Zhiqiang Hu; Wenfeng Liu; Chenbin Zhang; Jiawen Huang; Shaoting Zhang 001; Huiqun Yu; Yi Xiong 002; Hao Liu 081; Song Ke; Liang Hong (Briefings Bioinform., 2023)

Deep generative modeling and clustering of single cell Hi-C data. - Qiao Liu 008; Wanwen Zeng; Wei Zhang 241; Sicheng Wang; Hongyang Chen; Rui Jiang 001; Mu Zhou; Shaoting Zhang 001 (Briefings Bioinform., 2023)

PyMIC: A deep learning toolkit for annotation-efficient medical image segmentation. - Guotai Wang; Xiangde Luo; Ran Gu; Shuojue Yang; Yijie Qu; Shuwei Zhai; Qianfei Zhao; Kang Li 004; Shaoting Zhang 001 (Comput. Methods Programs Biomed., 2023)

Root canal treatment planning by automatic tooth and root canal segmentation in dental CBCT with deep multi-task feature learning. - Yiwei Wang; Wenjun Xia; Zhennan Yan; Liang Zhao 018; Xiaohe Bian; Chang Liu; Zhengnan Qi; Shaoting Zhang 001; Zisheng Tang (Medical Image Anal., 2023)

TISS-net: Brain tumor image synthesis and segmentation using cascaded dual-task networks and error-prediction consistency. - Jianghao Wu 001; Dong Guo; Lu Wang; Shuojue Yang; Yuanjie Zheng; Jonathan Shapey; Tom Vercauteren; Sotirios Bisdas; Robert Bradford; Shakeel R. Saeed; Neil Kitchen; Sébastien Ourselin; et al. (Neurocomputing, 2023)

A novel one-to-multiple unsupervised domain adaptation framework for abdominal organ segmentation. - Xiaowei Xu; Yinan Chen; Jianghao Wu 001; Jiangshan Lu; Yuxiang Ye; Yechong Huang; Xin Dou; Kang Li 004; Guotai Wang; Shaoting Zhang 001; Wei Gong (Medical Image Anal., 2023)

Efficient Multi-Organ Segmentation From 3D Abdominal CT Images With Lightweight Network and Knowledge Distillation. - Qianfei Zhao; Lanfeng Zhong; Jianghong Xiao; Jingbo Zhang; Yinan Chen; Wenjun Liao; Shaoting Zhang 001; Guotai Wang (IEEE Trans. Medical Imaging, 2023)

CDDSA: Contrastive domain disentanglement and style augmentation for generalizable medical image segmentation. - Ran Gu; Guotai Wang; Jiangshan Lu; Jingyang Zhang; Wenhui Lei; Yinan Chen; Wenjun Liao; Shichuan Zhang; Kang Li 004; Dimitris N. Metaxas; Shaoting Zhang 001 (Medical Image Anal., 2023)

HAMIL: High-Resolution Activation Maps and Interleaved Learning for Weakly Supervised Segmentation of Histopathological Images. - Lanfeng Zhong; Guotai Wang; Xin Liao; Shaoting Zhang 001 (IEEE Trans. Medical Imaging, 2023)

Predicting cancer outcomes from whole slide images via hybrid supervision learning. - Xianying He; Jiahui Li 005; Fang Yan 002; Linlin Wang; Wen Chen 001; Xiaodi Huang; Zhiqiang Hu; Qi Duan; Hongsheng Li 001; Shaoting Zhang 001; Jie Zhao 014 (Neurocomputing, 2023)

UPL-SFDA: Uncertainty-Aware Pseudo Label Guided Source-Free Domain Adaptation for Medical Image Segmentation. - Jianghao Wu 001; Guotai Wang; Ran Gu; Tao Lu; Yinan Chen; Wentao Zhu 002; Tom Vercauteren; Sébastien Ourselin; Shaoting Zhang 001 (IEEE Trans. Medical Imaging, 2023)

Medical Dialogue System: A Survey of Categories, Methods, Evaluation and Challenges. - Xiaoming Shi; Zeming Liu; Li Du; Yuxuan Wang 001; Hongru Wang 003; Yuhang Guo 001; Tong Ruan; Jie Xu; Xiaofan Zhang 002; Shaoting Zhang 001 (ACL (Findings), 2024)

GECSum: Generative Evaluation-Driven Sequence Level Contrastive Learning for Abstractive Summarization. - Jiawen Xie; Shaoting Zhang 001; Xiaofan Zhang 002 (LREC/COLING, 2024)

ZePT: Zero-Shot Pan-Tumor Segmentation via Query-Disentangling and Self-Prompting. - Yankai Jiang 003; Zhongzhen Huang; Rongzhao Zhang; Xiaofan Zhang 002; Shaoting Zhang 001 (CVPR, 2024)

Modality-Aware and Shift Mixer for Multi-Modal Brain Tumor Segmentation. - Zhongzhen Huang; Linda Wei; Shaoting Zhang 001; Xiaofan Zhang 002 (ECAI, 2024)

Pathology-Knowledge Enhanced Multi-instance Prompt Learning for Few-Shot Whole Slide Image Classification. - Linhao Qu; Dingkang Yang; Dan Huang; Qinhao Guo; Rongkui Luo; Shaoting Zhang 001; Xiaosong Wang 001 (ECCV (11), 2024)

SAM-Med3D: Towards General-Purpose Segmentation Models for Volumetric Medical Images. - Haoyu Wang 010; Sizheng Guo; Jin Ye 002; Zhongying Deng; Junlong Cheng; Tianbin Li; Jianpin Chen; Yanzhou Su; Ziyan Huang; Yiqing Shen 003; Bin Fu; Shaoting Zhang 001; et al. (ECCV Workshops (16), 2024)

Boosting Dermatoscopic Lesion Segmentation Via Diffusion Models With Visual And Textual Prompts. - Shiyi Du; Xiaosong Wang 001; Yongyi Lu; Yuyin Zhou; Shaoting Zhang 001; Alan L. Yuille; Kang Li 004; Zongwei Zhou (ISBI, 2024)

RPL-SFDA: Reliable Pseudo Label-Guided Source-Free Cross-Modality Adaptation for NPC GTV Segmentation. - Xinya Liu; Jianghao Wu 001; Xiangde Luo; Wenjun Liao; Shichuan Zhang; Shaoting Zhang 001; Guotai Wang (ISBI, 2024)

Dual-Perspective Label Smoothing for Accurate Tumor Segmentation. - Lilong Wang; Xuan Wang; Yali Xu; Xiangan Wu; Shunda Du; Shaoting Zhang 001; Qiang Sun; Xiaosong Wang 001 (ISBI, 2024)

Semi-Supervised Medical Image Segmentation via Multi-Group Network with Consistency Among Heterogeneous Loss Supervision. - Ping Ye; He Li; Shaoting Zhang 001; Guotai Wang (ISBI, 2024)

Self-Supervised Pre-Training Based On Contrastive Complementary Masking for Semi-Supervised Cardiac Image Segmentation. - Yubo Zhou; Ran Gu; Shaoting Zhang 001; Guotai Wang (ISBI, 2024)

Swin-UMamba: Mamba-Based UNet with ImageNet-Based Pretraining. - Jiarun Liu; Hao Yang 026; Hong-Yu Zhou; Yan Xi; Lequan Yu; Cheng Li 008; Yong Liang; Guangming Shi; Yizhou Yu; Shaoting Zhang 001; Hairong Zheng; Shanshan Wang 002 (MICCAI (9), 2024)

PathoTune: Adapting Visual Foundation Model to Pathological Specialists. - Jiaxuan Lu; Fang Yan 002; Xiaofan Zhang 002; Yue Gao 002; Shaoting Zhang 001 (MICCAI (4), 2024)

Rethinking Abdominal Organ Segmentation (RAOS) in the Clinical Scenario: A Robustness Evaluation Benchmark with Challenging Cases. - Xiangde Luo; Zihan Li; Shaoting Zhang 001; Wenjun Liao; Guotai Wang (MICCAI (9), 2024)

Multi-modal Data Binding for Survival Analysis Modeling with Incomplete Data and Annotations. - Linhao Qu; Dan Huang; Shaoting Zhang 001; Xiaosong Wang 001 (MICCAI (5), 2024)

BrainSCK: Brain Structure and Cognition Alignment via Knowledge Injection and Reactivation for Diagnosing Brain Disorders. - Lilong Wang; Mianxin Liu; Shaoting Zhang 001; Xiaosong Wang 001 (MICCAI (2), 2024)

DeReStainer: H&E to IHC Pathological Image Translation via Decoupled Staining Channels. - Linda Wei; Shengyi Hua; Shaoting Zhang 001; Xiaofan Zhang 002 (DGM4MICCAI@MICCAI, 2024)

GMAI-MMBench: A Comprehensive Multimodal Evaluation Benchmark Towards General Medical AI. - Pengcheng Chen; Jin Ye 002; Guoan Wang; Yanjun Li 007; Zhongying Deng; Wei Li 044; Tianbin Li; Haodong Duan; Ziyan Huang; Yanzhou Su; Benyou Wang; Shaoting Zhang 001; et al. (NeurIPS, 2024)

CAT: Coordinating Anatomical-Textual Prompts for Multi-Organ and Tumor Segmentation. - Zhongzhen Huang; Yankai Jiang 003; Rongzhao Zhang; Shaoting Zhang 001; Xiaofan Zhang 002 (NeurIPS, 2024)

OlympicArena: Benchmarking Multi-discipline Cognitive Reasoning for Superintelligent AI. - Zhen Huang; Zengzhi Wang; Shijie Xia; Xuefeng Li 003; Haoyang Zou; Ruijie Xu; Run-Ze Fan; Lyumanshan Ye; Ethan Chern; Yixin Ye; Yikai Zhang 003; Yuqing Yang 004; et al. (NeurIPS, 2024)

One-to-Normal: Anomaly Personalization for Few-shot Anomaly Detection. - Yiyue Li; Shaoting Zhang 001; Kang Li 004; Qicheng Lao (NeurIPS, 2024)

MedBench: A Comprehensive, Standardized, and Reliable Benchmarking System for Evaluating Chinese Medical Large Language Models. - Mianxin Liu; Weiguo Hu; Jinru Ding; Jie Xu; Xiaoyang Li; Lifeng Zhu; Zhian Bai; Xiaoming Shi; Benyou Wang; Haitao Song 001; Pengfei Liu 003; Xiaofan Zhang 002; et al. (Big Data Min. Anal., 2024)

ScribSD+: Scribble-supervised medical image segmentation based on simultaneous multi-scale knowledge distillation and class-wise contrastive regularization. - Yijie Qu; Tao Lu; Shaoting Zhang 001; Guotai Wang (Comput. Medical Imaging Graph., 2024)

Data-Centric Foundation Models in Computational Healthcare: A Survey. - Yunkun Zhang; Jin Gao; Zheling Tan; Lingfeng Zhou; Kexin Ding; Mu Zhou; Shaoting Zhang 001; Dequan Wang (CoRR, 2024)

Evaluating and Enhancing Large Language Models Performance in Domain-specific Medicine: Osteoarthritis Management with DocOA. - Xi Chen; Mingke You; Li Wang 109; Weizhi Liu; Yu Fu; Jie Xu; Shaoting Zhang 001; Gang Chen; Kang Li 004; Jian Li (CoRR, 2024)

Swin-UMamba: Mamba-based UNet with ImageNet-based pretraining. - Jiarun Liu; Hao Yang 026; Hong-Yu Zhou; Yan Xi; Lequan Yu; Yizhou Yu; Yong Liang; Guangming Shi; Shaoting Zhang 001; Hairong Zheng; Shanshan Wang 002 (CoRR, 2024)

OpenMEDLab: An Open-source Platform for Multi-modality Foundation Models in Medicine. - Xiaosong Wang 001; Xiaofan Zhang 002; Guotai Wang; Junjun He; Zhongyu Li 002; Wentao Zhu 001; Yi Guo 002; Qi Dou 001; Xiaoxiao Li; Dequan Wang; Liang Hong; Qicheng Lao; et al. (CoRR, 2024)

VLM-CPL: Consensus Pseudo Labels from Vision-Language Models for Human Annotation-Free Pathological Image Classification. - Lanfeng Zhong; Xin Liao; Shaoting Zhang 001; Xiaofan Zhang 002; Guotai Wang (CoRR, 2024)

Tool Calling: Enhancing Medication Consultation via Retrieval-Augmented Large Language Models. - Zhongzhen Huang; Kui Xue; Yongqi Fan; Linjie Mu; Ruoyu Liu; Tong Ruan; Shaoting Zhang 001; Xiaofan Zhang 002 (CoRR, 2024)

Medical Dialogue: A Survey of Categories, Methods, Evaluation and Challenges. - Xiaoming Shi; Zeming Liu; Li Du; Yuxuan Wang 001; Hongru Wang 003; Yuhang Guo 001; Tong Ruan; Jie Xu; Shaoting Zhang 001 (CoRR, 2024)

A Comprehensive Survey of Foundation Models in Medicine. - Wasif Khan; Seowung Leem; Kyle B. See; Joshua K. Wong; Shaoting Zhang 001; Ruogu Fang (CoRR, 2024)

CC-DCNet: Dynamic Convolutional Neural Network with Contrastive Constraints for Identifying Lung Cancer Subtypes on Multi-modality Images. - Yuan Jin; Gege Ma; Geng Chen 001; Tianling Lyu; Jan Egger; Junhui Lyu; Shaoting Zhang 001; Wentao Zhu 002 (CoRR, 2024)

Cost-effective Instruction Learning for Pathology Vision and Language Analysis. - Kaitao Chen; Mianxin Liu; Fang Yan 002; Lei Ma 006; Xiaoming Shi; Lilong Wang; Xiaosong Wang 001; Lifeng Zhu; Zhe Wang 043; Mu Zhou; Shaoting Zhang 001 (CoRR, 2024)

Exploring the Feasibility of Multimodal Chatbot AI as Copilot in Pathology Diagnostics: Generalist Model's Pitfall. - Mianxin Liu; Jianfeng Wu; Fang Yan 002; Hongjun Li; Wei Wang 057; Shaoting Zhang 001; Zhe Wang 043 (CoRR, 2024)

MedViLaM: A multimodal large language model with advanced generalizability and explainability for medical data understanding and generation. - Lijian Xu; Hao Sun; Ziyu Ni; Hongsheng Li 001; Shaoting Zhang 001 (CoRR, 2024)

A foundation model for generalizable disease diagnosis in chest X-ray images. - Lijian Xu; Ziyu Ni; Hao Sun; Hongsheng Li 001; Shaoting Zhang 001 (CoRR, 2024)

BrainMVP: Multi-modal Vision Pre-training for Brain Image Analysis using Multi-parametric MRI. - Shaohao Rui; Lingzhi Chen; Zhenyu Tang 005; Lilong Wang; Mianxin Liu; Shaoting Zhang 001; Xiaosong Wang 001 (CoRR, 2024)

MedDiff-FM: A Diffusion-based Foundation Model for Versatile Medical Image Applications. - Yongrui Yu; Yannian Gu; Shaoting Zhang 001; Xiaofan Zhang 002 (CoRR, 2024)

Cross Group Attention and Group-wise Rolling for Multimodal Medical Image Synthesis. - Tao Song 002; Yicheng Wu 001; Minhao Hu; Xiangde Luo; Linda Wei; Guotai Wang; Yi Guo 002; Feng Xu; Shaoting Zhang 001 (CoRR, 2024)

Cycle-Consistent Bridge Diffusion Model for Accelerated MRI Reconstruction. - Tao Song 002; Yicheng Wu 001; Minhao Hu; Xiangde Luo; Guoting Luo; Guotai Wang; Yi Guo 002; Feng Xu; Shaoting Zhang 001 (CoRR, 2024)

Domain composition and attention network trained with synthesized unlabeled images for generalizable medical image segmentation. - Jiangshan Lu; Ran Gu; Wenjun Liao; Shichuan Zhang; Huijun Yu; Shaoting Zhang 001; Guotai Wang (Neurocomputing, 2024)

TransUNet: Rethinking the U-Net architecture design for medical image segmentation through the lens of transformers. - Jieneng Chen; Jieru Mei; Xianhang Li; Yongyi Lu; Qihang Yu; Qingyue Wei; Xiangde Luo; Yutong Xie 001; Ehsan Adeli 001; Yan Wang 033; Matthew P. Lungren; Shaoting Zhang 001; et al. (Medical Image Anal., 2024)

DMSPS: Dynamically mixed soft pseudo-label supervision for scribble-supervised medical image segmentation. - Meng Han; Xiangde Luo; Xiangjiang Xie; Wenjun Liao; Shichuan Zhang; Tao Song 002; Guotai Wang; Shaoting Zhang 001 (Medical Image Anal., 2024)

Classification of lung cancer subtypes on CT images with synthetic pathological priors. - Wentao Zhu 002; Yuan Jin; Gege Ma; Geng Chen 001; Jan Egger; Shaoting Zhang 001; Dimitris N. Metaxas (Medical Image Anal., 2024)

An objective quantitative diagnosis of depression using a local-to-global multimodal fusion graph neural network. - Shuyu Liu; Jingjing Zhou; Xuequan Zhu; Ya Zhang 002; Xinzhu Zhou; Shaoting Zhang 001; Zhi Yang; Ziji Wang; Ruoxi Wang; Yizhe Yuan; Xin Fang; Xiongying Chen; et al. (Patterns, 2024)

DA-Tran: Multiphase liver tumor segmentation with a domain-adaptive transformer network. - Yangfan Ni; Geng Chen 001; Zhan Feng; Heng Cui 001; Dimitris N. Metaxas; Shaoting Zhang 001; Wentao Zhu 002 (Pattern Recognit., 2024)

Semi-supervised pathological image segmentation via cross distillation of multiple attentions and Seg-CAM consistency. - Lanfeng Zhong; Xiangde Luo; Xin Liao; Shaoting Zhang 001; Guotai Wang (Pattern Recognit., 2024)

AVDNet: Joint coronary artery and vein segmentation with topological consistency. - Wenji Wang; Qing Xia 002; Zhennan Yan; Zhiqiang Hu; Yinan Chen; Wen Zheng; Xiao Wang; Shaoping Nie; Dimitris N. Metaxas; Shaoting Zhang 001 (Medical Image Anal., 2024)

On the challenges and perspectives of foundation models for medical image analysis. - Shaoting Zhang 001; Dimitris N. Metaxas (Medical Image Anal., 2024)

One-Shot Weakly-Supervised Segmentation in 3D Medical Images. - Wenhui Lei; Qi Su; Tianyu Jiang; Ran Gu; Na Wang; Xinglong Liu; Guotai Wang; Xiaofan Zhang 002; Shaoting Zhang 001 (IEEE Trans. Medical Imaging, 2024)

Hierarchical-Instance Contrastive Learning for Minority Detection on Imbalanced Medical Datasets. - Yiyue Li; Guangwu Qian; Xiaoshuang Jiang; Zekun Jiang; Wen Wen; Shaoting Zhang 001; Kang Li 004; Qicheng Lao (IEEE Trans. Medical Imaging, 2024)

Pattern-Aware Transformer: Hierarchical Pattern Propagation in Sequential Medical Images. - Lingyun Wu; Xiang Gao; Zhiqiang Hu; Shaoting Zhang 001 (IEEE Trans. Medical Imaging, 2024)

FPL+: Filtered Pseudo Label-Based Unsupervised Cross-Modality Adaptation for 3D Medical Image Segmentation. - Jianghao Wu 001; Dong Guo; Guotai Wang; Qiang Yue; Huijun Yu; Kang Li 004; Shaoting Zhang 001 (IEEE Trans. Medical Imaging, 2024)

MMXU: A Multi-Modal and Multi-X-ray Understanding Dataset for Disease Progression. - Linjie Mu; Zhongzhen Huang; Shengqian Qin; Yakun Zhu; Shaoting Zhang 001; Xiaofan Zhang 002 (ACL (Findings), 2025)

Meta-Tool: Unleash Open-World Function Calling Capabilities of General-Purpose Large Language Models. - Shengqian Qin; Yakun Zhu; Linjie Mu; Shaoting Zhang 001; Xiaofan Zhang 002 (ACL (1), 2025)

Interactive Evaluation for Medical LLMs via Task-oriented Dialogue System. - Ruoyu Liu; Kui Xue; Xiaofan Zhang 002; Shaoting Zhang 001 (COLING, 2025)

Multi-modal Vision Pre-training for Medical Image Analysis. - Shaohao Rui; Lingzhi Chen; Zhenyu Tang 005; Lilong Wang; Mianxin Liu; Shaoting Zhang 001; Xiaosong Wang 001 (CVPR, 2025)

Unleashing the Potential of Vision-Language Pre-Training for 3D Zero-Shot Lesion Segmentation via Mask-Attribute Alignment. - Yankai Jiang 003; Wenhui Lei; Xiaofan Zhang 002; Shaoting Zhang 001 (ICLR, 2025)

Rethinking the generalization of drug target affinity prediction algorithms via similarity aware evaluation. - Chenbin Zhang; Zhiqiang Hu; Chuchu Jiang; Wen Chen 022; Jie Xu; Shaoting Zhang 001 (ICLR, 2025)

Fairness Analysis of Clip-Based Foundation Models for X-Ray Image Classification. - Xiangyu Sun; Xiaoguang Zou; Yuanquan Wu; Guotai Wang; Shaoting Zhang 001 (ISBI, 2025)

MedOdyssey: A Medical Domain Benchmark for Long Context Evaluation Up to 200K Tokens. - Yongqi Fan; Hongli Sun; Kui Xue; Xiaofan Zhang 002; Shaoting Zhang 001; Tong Ruan (NAACL (Findings), 2025)

Guiding Medical Vision-Language Models with Diverse Visual Prompts: Framework Design and Comprehensive Exploration of Prompt Variations. - Kangyu Zhu; Ziyuan Qin 001; Huahui Yi; Zekun Jiang; Qicheng Lao; Shaoting Zhang 001; Kang Li 004 (NAACL (Long Papers), 2025)

MeNTi: Bridging Medical Calculator and LLM Agent with Nested Tool Calling. - Yakun Zhu; Shaohang Wei; Xu Wang; Kui Xue; Shaoting Zhang 001; Xiaofan Zhang 002 (NAACL (Long Papers), 2025)

Radiologist-inspired Symmetric Local-Global Multi-Supervised Learning for early diagnosis of pneumoconiosis. - Jiarui Wang; Meiyue Song; Deng-Ping Fan; Xiaoxu Wang; Shaoting Zhang 001; Juntao Yang; Jiangfeng Liu; Chen Wang; Binglu Wang (Expert Syst. Appl., 2025)

SRPL-SFDA: Sam-Guided Reliable Pseudo-Labels For Source-Free Domain Adaptation in medical image segmentation. - Xinya Liu; Jianghao Wu 001; Tao Lu; Shaoting Zhang 001; Guotai Wang (Neurocomputing, 2025)

ECGFM: A foundation model for ECG analysis trained on a multi-center million-ECG dataset. - Shaoting Zhang 001; Yishan Du; Wenji Wang; Xianying He; Fangfang Cui; Liang Zhao 018; Bei Wang 004; Zhiqiang Hu; Ziqiang Wang; Qing Xia 002; Tian Shen; Jie Zhao 014 (Inf. Fusion, 2025)

A-Eval: A benchmark for cross-dataset and cross-modality evaluation of abdominal multi-organ segmentation. - Ziyan Huang; Zhongying Deng; Jin Ye 002; Haoyu Wang 010; Yanzhou Su; Tianbin Li; Hui Sun; Junlong Cheng; Jianpin Chen; Junjun He; Yun Gu; Shaoting Zhang 001; et al. (Medical Image Anal., 2025)

MedLSAM: Localize and segment anything model for 3D CT images. - Wenhui Lei; Wei Xu 046; Kang Li 004; Xiaofan Zhang 002; Shaoting Zhang 001 (Medical Image Anal., 2025)

SegRap2023: A benchmark of organs-at-risk and gross tumor volume Segmentation for Radiotherapy Planning of Nasopharyngeal Carcinoma. - Xiangde Luo; Jia Fu; Yunxin Zhong; Shuolin Liu; Bing Han; Mehdi Astaraki; Simone Bendazzoli; Iuliana Toma-Dasu; Yiwen Ye; Ziyang Chen 003; Yong Xia 001; Yanzhou Su; et al. (Medical Image Anal., 2025)

Editorial for Special Issue on Foundation Models for Medical Image Analysis. - Xiaosong Wang 001; Dequan Wang; Xiaoxiao Li; Jens Rittscher; Dimitris N. Metaxas; Shaoting Zhang 001 (Medical Image Anal., 2025)

UM-CAM: Uncertainty-weighted multi-resolution class activation maps for weakly-supervised segmentation. - Jia Fu; Guotai Wang; Tao Lu; Qiang Yue; Tom Vercauteren; Sébastien Ourselin; Shaoting Zhang 001 (Pattern Recognit., 2025)

Fine-grained medical image out-of-distribution detection through multi-view feature uncertainty and adversarial sample generation. - Jie Wei; Guotai Wang; Shaoting Zhang 001 (Pattern Recognit., 2025)

Guiding Medical Vision-Language Models with Explicit Visual Prompts: Framework Design and Comprehensive Exploration of Prompt Variations. - Kangyu Zhu; Ziyuan Qin 001; Huahui Yi; Zekun Jiang; Qicheng Lao; Shaoting Zhang 001; Kang Li 004 (CoRR, 2025)

GLFC: Unified Global-Local Feature and Contrast Learning with Mamba-Enhanced UNet for Synthetic CT Generation from CBCT. - Xianhao Zhou; Jianghao Wu 001; Huangxuan Zhao; Lei Chen; Shaoting Zhang 001; Guotai Wang (CoRR, 2025)

O1 Replication Journey - Part 3: Inference-time Scaling for Medical Reasoning. - Zhongzhen Huang; Gui Geng; Shengyi Hua; Zhen Huang; Haoyang Zou; Shaoting Zhang 001; Pengfei Liu 003; Xiaofan Zhang 002 (CoRR, 2025)

Segmentation and Vascular Vectorization for Coronary Artery by Geometry-Based Cascaded Neural Network. - Xiaoyu Yang 007; Lijian Xu; Simon C. H. Yu; Qing Xia 002; Hongsheng Li 001; Shaoting Zhang 001 (IEEE Trans. Medical Imaging, 2025)

A Data-Efficient Pan-Tumor Foundation Model for Oncology CT Interpretation. - Wenhui Lei; Hanyu Chen; Zitian Zhang; Luyang Luo; Qiong Xiao; Yannian Gu; Peng Gao; Yankai Jiang 003; Ci Wang; Guangtao Wu; Tongjia Xu; Yingjie Zhang; et al. (CoRR, 2025)

MedForge: Building Medical Foundation Models Like Open Source Software Development. - Zheling Tan; Kexin Ding; Jin Gao; Mu Zhou; Dimitris N. Metaxas; Shaoting Zhang 001; Dequan Wang (CoRR, 2025)

Interactive Segmentation and Report Generation for CT Images. - Yannian Gu; Wenhui Lei; Hanyu Chen; Xiaofan Zhang 002; Shaoting Zhang 001 (CoRR, 2025)

PathOrchestra: A Comprehensive Foundation Model for Computational Pathology with Over 100 Diverse Clinical-Grade Tasks. - Fang Yan 002; Jianfeng Wu; Jiawen Li 005; Wei Wang 057; Jiaxuan Lu; Wen Chen 001; Zizhao Gao; Jianan Li; Hong Yan; Jiabo Ma; Minda Chen; Yang Lu 009; et al. (CoRR, 2025)

Slice2Mesh: 3D Surface Reconstruction From Sparse Slices of Images for the Left Ventricle. - Jia Xiao; Wen Zheng; Wenji Wang; Qing Xia 002; Zhennan Yan; Qian Guo; Xiao Wang; Shaoping Nie; Shaoting Zhang 001 (IEEE Trans. Medical Imaging, 2025)

Aligning Large Language Models with Healthcare Stakeholders: A Pathway to Trustworthy AI Integration. - Kexin Ding; Mu Zhou; Akshay Chaudhari; Shaoting Zhang 001; Dimitris N. Metaxas (CoRR, 2025)

DiagnosisArena: Benchmarking Diagnostic Reasoning for Large Language Models. - Yakun Zhu; Zhongzhen Huang; Linjie Mu; Yutong Huang; Wei Nie; Jiaji Liu; Shaoting Zhang 001; Pengfei Liu 003; Xiaofan Zhang 002 (CoRR, 2025)

Graph Mamba for Efficient Whole Slide Image Understanding. - Jiaxuan Lu; Junyan Shi; Yuhui Lin; Fang Yan 002; Yue Gao 002; Shaoting Zhang 001; Xiaosong Wang 001 (CoRR, 2025)

Elicit and Enhance: Advancing Multimodal Reasoning in Medical Scenarios. - Linjie Mu; Zhongzhen Huang; Yakun Zhu; Xiangyu Zhao; Shaoting Zhang 001; Xiaofan Zhang 002 (CoRR, 2025)

Improving Foundation Model for Endoscopy Video Analysis via Representation Learning on Long Sequences. - Zhao Wang 006; Chang Liu; Lingting Zhu; Tongtong Wang; Shaoting Zhang 001; Qi Dou 001 (IEEE J. Biomed. Health Informatics, 2025)

OpenPath: Open-Set Active Learning for Pathology Image Classification via Pre-trained Vision-Language Models. - Lanfeng Zhong; Xin Liao; Shichuan Zhang; Shaoting Zhang 001; Guotai Wang (CoRR, 2025)

VBCD: A Voxel-Based Framework for Personalized Dental Crown Design. - Linda Wei; Chang Liu; Wenran Zhang; Zengji Zhang; Shaoting Zhang 001; Hongsheng Li 001 (CoRR, 2025)

Smooth Reading: Bridging the Gap of Recurrent LLM to Self-Attention LLM on Long-Context Tasks. - Kai Liu; Zhan Su 002; Peijie Dong; Fengran Mo; Jianfei Gao 003; Shaoting Zhang 001; Kai Chen 026 (CoRR, 2025)

Cost-effective instruction learning for pathology vision and language analysis. - Kaitao Chen; Mianxin Liu; Fang Yan 002; Lei Ma 008; Xiaoming Shi; Lilong Wang; Xiaosong Wang 001; Lifeng Zhu; Zhe Wang 043; Mu Zhou; Shaoting Zhang 001 (Nat. Comput. Sci., 2025)

MedCAL-Bench: A Comprehensive Benchmark on Cold-Start Active Learning with Foundation Models for Medical Image Analysis. - Ning Zhu; Xiaochuan Ma; Shaoting Zhang 001; Guotai Wang (CoRR, 2025)

Versatile Source-Free Active Domain Adaptation for multi-center and multi-rater medical image segmentation. - Hongqiu Wang; Shichen Zhang; Jian Chen; Yuan He; Jinfeng Xu; Hui Huang; Jianghong Xiao; Lu Li; Wenjun Liao; Shaoting Zhang 001; Xiangde Luo (Inf. Fusion, 2026)