Aird: a computation-oriented mass spectrometry data format enables a higher compression ratio and less decoding time. - Miaoshan Lu; Shaowei An; Ruimin Wang; Jinyin Wang; Changbin Yu (BMC Bioinform., 2022)

MetaPro: a web-based metabolomics application for MS data batch inspection and library curation. - Shaowei An; Ruimin Wang; Miaoshan Lu; Changbin Yu (Zenodo, 2022)

3D-MSNet: a point cloud-based deep learning model for untargeted feature detection and quantification in profile LC-HRMS data. - Ruimin Wang; Miaoshan Lu; Shaowei An; Jinyin Wang; Changbin Yu (Bioinform., 2023)

Injectiondesign: web service of plate design with optimized stratified block randomization for modern GC/LC-MS-based sample preparation. - Miaoshan Lu; Hengxuan Jiang; Ruimin Wang; Shaowei An; Jiawei Wang; Changbin Yu (BMC Bioinform., 2023)

G-Aligner: a graph-based feature alignment method for untargeted LC-MS-based metabolomics. - Ruimin Wang; Miaoshan Lu; Shaowei An; Jinyin Wang; Changbin Yu (BMC Bioinform., 2023)

Ion entropy and accurate entropy-based FDR estimation in metabolomics. - Shaowei An; Miaoshan Lu; Ruimin Wang; Jinyin Wang; Hengxuan Jiang; Cong Xie; Junjie Tong; Changbin Yu (Briefings Bioinform., 2024)

MRMPro: a web-based tool to improve the speed of manual calibration for multiple reaction monitoring data analysis by mass spectrometry. - Ruimin Wang; Hengxuan Jiang; Miaoshan Lu; Junjie Tong; Shaowei An; Jinyin Wang; Changbin Yu (BMC Bioinform., 2024)