Evaluation of methods for detection of fluorescence labeled subcellular objects in microscope images. - Pekka Ruusuvuori; Tarmo Äijö; Sharif Chowdhury; Cecilia Garmendia-Torres; Jyrki Selinummi; Mirko Birbaumer; Aimée M. Dudley; Lucas Pelkmans; Olli Yli-Harja (BMC Bioinform., 2010)

Information propagation within the Genetic Network of Saccharomyces cerevisiae. - Sharif Chowdhury; Jason Lloyd-Price; Olli-Pekka Smolander; Wayne C. V. Baici; Timothy R. Hughes; Olli Yli-Harja; Gordon Chua; Andre S. Ribeiro (BMC Syst. Biol., 2010)

Diversity of temporal correlations between genes in models of noisy and noiseless gene networks. - Andre S. Ribeiro; Jason Lloyd-Price; Sharif Chowdhury; Olli Yli-Harja (Biosyst., 2011)

Cell segmentation by multi-resolution analysis and maximum likelihood estimation (MAMLE). - Sharif Chowdhury; Meenakshisundaram Kandhavelu; Olli Yli-Harja; Andre S. Ribeiro (BMC Bioinform., 2013)

Image Analysis Algorithms for Single-Cell Study in Systems Biology. - Sharif Chowdhury (2016)