Searching for Backbones and Fat: A Limit-Crossing Approach with Applications. - Sharlee Climer; Weixiong Zhang (AAAI/IAAI, 2002)

Image database indexing using JPEG coefficients. - Sharlee Climer; Sanjiv K. Bhatia (Pattern Recognit., 2002)

Local Lines: A linear time line detector. - Sharlee Climer; Sanjiv K. Bhatia (Pattern Recognit. Lett., 2003)

A Linear Search Strategy using Bounds. - Sharlee Climer; Weixiong Zhang (ICAPS, 2004)

Take a walk and cluster genes: a TSP-based approach to optimal rearrangement clustering. - Sharlee Climer; Weixiong Zhang (ICML, 2004)

Cut-and-solve: An iterative search strategy for combinatorial optimization problems. - Sharlee Climer; Weixiong Zhang (Artif. Intell., 2006)

Rearrangement Clustering: Pitfalls, Remedies, and Applications. - Sharlee Climer; Weixiong Zhang (J. Mach. Learn. Res., 2006)

Complete Parsimony Haplotype Inference Problem and Algorithms. - Gerold Jäger; Sharlee Climer; Weixiong Zhang (ESA, 2009)

How frugal is mother nature with haplotypes? - Sharlee Climer; Gerold Jäger; Alan R. Templeton; Weixiong Zhang (Bioinform., 2009)

SplittingHeirs: inferring haplotypes by optimizing resultant dense graphs. - Sharlee Climer; Alan R. Templeton; Weixiong Zhang (BCB, 2010)

Allele-Specific Network Reveals Combinatorial Interaction That Transcends Small Effects in Psoriasis GWAS. - Sharlee Climer; Alan R. Templeton; Weixiong Zhang (PLoS Comput. Biol., 2014)

The complete parsimony haplotype inference problem and algorithms based on integer programming, branch-and-bound and Boolean satisfiability. - Gerold Jäger; Sharlee Climer; Weixiong Zhang (J. Discrete Algorithms, 2016)

Attacking the opioid epidemic: determining the epistatic and pleiotropic genetic architectures for chronic pain and opioid addiction. - Wayne Joubert; Deborah A. Weighill; David Kainer; Sharlee Climer; Amy Justice; Kjiersten Fagnan; Daniel A. Jacobson (SC, 2018)

Evolving to recognize high-dimensional relationships in data: GA operators and representation designed expressly for community detection. - Kenneth Smith 003; Cezary Z. Janikow; Sharlee Climer (GECCO (Companion), 2019)

Parallel accelerated Custom Correlation Coefficient calculations for genomics applications. - Wayne Joubert; James Nance; Sharlee Climer; Deborah A. Weighill; Daniel A. Jacobson (Parallel Comput., 2019)

A Search and Filter Strategy for Identifying Differentially Co-Expressed Analyte Modules. - Jamie Lea; Sharlee Climer (BIBM, 2020)

Chapter Four - Eyeing the patterns: Data visualization using doubly-seriated color heatmaps. - Matthew Lane; Alberto Maiocco; Sanjiv K. Bhatia; Sharlee Climer (Adv. Comput., 2020)

Finding Single and Multi-Gene Expression Patterns for Psoriasis Using Sub-Pattern Frequency Pruning. - Kenneth Smith 003; Jamie Lea; Sharlee Climer (BIBM, 2021)

Learning from learning machines: a new generation of AI technology to meet the needs of science. - Luca Pion-Tonachini; Kristofer E. Bouchard; Héctor García Martín; Sean Peisert; W. Bradley Holtz; Anil Aswani; Dipankar Dwivedi; Haruko M. Wainwright; Ghanshyam Pilania; Benjamin Nachman; Babetta L. Marrone; Nicola Falco; et al. (CoRR, 2021)

COVID-19 and the differential dilemma. - Sharlee Climer (Patterns, 2021)

Connecting the dots: The boons and banes of network modeling. - Sharlee Climer (Patterns, 2021)

Mr. Clean: An Ensemble of Data Cleaning Algorithms for Increased Data Retention. - Kenneth Smith 003; Sharlee Climer (BIBM, 2023)

Predicting COVID-19 Severity Using a Cut-and-Solve Feature Selection Approach. - Kenneth Smith 003; Michael Chan; John Brandenburg; Katarina A Jones; Shawn R. Campagna; Michael Garvin; Alan R. Templeton; Daniel A. Jacobson; Carlos Cruchaga; Sharlee Climer (BIBM, 2023)

Improving Data Cleaning Using Discrete Optimization. - Kenneth Smith 003; Sharlee Climer (CoRR, 2024)

Sifting out communities in large sparse networks. - Sharlee Climer; Kenneth Smith 003; Wei Yang; Lisa de las Fuentes; Victor G. Dávila-Román; C. Charles Gu (CoRR, 2024)

Capturing biomarkers associated with Alzheimer disease subtypes using data distribution characteristics. - Kenneth Smith 003; Sharlee Climer (Frontiers Comput. Neurosci., 2024)