Identification of compositionally distinct regions in genomes using the centroid method. - Issaac Rajan; Sarang Aravamuthan; Sharmila S. Mande (Bioinform., 2007)

The 4M (Mixed Memory Markov Model) Algorithm for Finding Genes in Prokaryotic Genomes. - Mathukumalli Vidyasagar; Sharmila S. Mande; Ch. V. Siva K. Reddy; V. V. Raja Rao (IEEE Trans. Autom. Control., 2008)

SOrt-ITEMS: Sequence orthology based approach for improved taxonomic estimation of metagenomic sequences. - Mohammed Monzoorul Haque; Tarini Shankar Ghosh; Dinakar Komanduri; Sharmila S. Mande (Bioinform., 2009)

Mathematical Modeling of Regulation of Type III Secretion System in Salmonella enterica Serovar Typhimurium by SirA. - Aparna B. Ganesh; Hannah Rajasingh; Sharmila S. Mande (Silico Biol., 2009)

DiScRIBinATE: a rapid method for accurate taxonomic classification of metagenomic sequences. - Tarini Shankar Ghosh; Monzoorul Haque Mohammed; Sharmila S. Mande (BMC Bioinform., 2010)

SPHINX - an algorithm for taxonomic binning of metagenomic sequences. - Monzoorul Haque Mohammed; Tarini Shankar Ghosh; Nitin Kumar Singh; Sharmila S. Mande (Bioinform., 2011)

HabiSign: a novel approach for comparison of metagenomes and rapid identification of habitat-specific sequences. - Tarini Shankar Ghosh; Monzoorul Haque Mohammed; Hannah Rajasingh; Sudha Chadaram; Sharmila S. Mande (BMC Bioinform., 2011)

Classification of metagenomic sequences: methods and challenges. - Sharmila S. Mande; Monzoorul Haque Mohammed; Tarini Shankar Ghosh (Briefings Bioinform., 2012)

DELIMINATE - a fast and efficient method for loss-less compression of genomic sequences: Sequence analysis. - Monzoorul Haque Mohammed; Anirban Dutta; Tungadri Bose; Sudha Chadaram; Sharmila S. Mande (Bioinform., 2012)

FQC: A novel approach for efficient compression, archival, and dissemination of fastq datasets. - Anirban Dutta; Mohammed Monzoorul Haque; Tungadri Bose; Ch. V. Siva K. Reddy; Sharmila S. Mande (J. Bioinform. Comput. Biol., 2015)

Grid-Assembly: An oligonucleotide composition-based partitioning strategy to aid metagenomic sequence assembly. - Tarini Shankar Ghosh; Varun Mehra; Sharmila S. Mande (J. Bioinform. Comput. Biol., 2015)

CompNet: a GUI based tool for comparison of multiple biological interaction networks. - Bhusan K. Kuntal; Anirban Dutta; Sharmila S. Mande (BMC Bioinform., 2016)

Web-igloo: a web based platform for multivariate data visualization. - Bhusan K. Kuntal; Sharmila S. Mande (Bioinform., 2017)

Correction to: CompNet: a GUI based tool for comparison of multiple biological interaction networks. - Bhusan K. Kuntal; Anirban Dutta; Sharmila S. Mande (BMC Bioinform., 2019)

FunGeCo: a web-based tool for estimation of functional potential of bacterial genomes and microbiomes using gene context information. - Swadha Anand; Bhusan K. Kuntal; Anwesha Mohapatra; Vineet Bhatt; Sharmila S. Mande (Bioinform., 2020)

MetagenoNets: comprehensive inference and meta-insights for microbial correlation networks. - Sunil Nagpal; Rashmi Singh; Deepak Yadav; Sharmila S. Mande (Nucleic Acids Res., 2020)

Utilizing domain-based features to improve classification accuracy of biomedical text having bacterial associations. - Vatsala Pokhrel; Bhusan K. Kuntal; Divyanshu Srivastava; Sharmila S. Mande; Krishanu Das Baksi (BIBM, 2021)

NetSets.js: a JavaScript framework for compositional assessment and comparison of biological networks through Venn-integrated network diagrams. - Sunil Nagpal; Bhusan K. Kuntal; Sharmila S. Mande (Bioinform., 2021)

BactInt: A domain driven transfer learning approach and a corpus for extracting inter-bacterial interactions from biomedical text. - Krishanu Das Baksi; Vatsala Pokhrel; Bhusan K. Kuntal; Sharmila S. Mande (CoRR, 2023)

BactInt: A domain driven transfer learning approach for extracting inter-bacterial associations from biomedical text. - Krishanu Das Baksi; Vatsala Pokhrel; Anand Eruvessi Pudavar; Sharmila S. Mande; Bhusan K. Kuntal (Comput. Biol. Chem., 2024)