Annotation of gene promoters by integrative data-mining of ChIP-seq Pol-II enrichment data. - Ravi Gupta; Priyankara Wikramasinghe; Anirban Bhattacharyya; Francisco A. Perez; Sharmistha Pal; Ramana V. Davuluri (BMC Bioinform., 2010)

IsoformEx: Isoform level gene expression estimation using weighted non-negative least squares from mRNA-Seq data. - Hyunsoo Kim; Yingtao Bi; Sharmistha Pal; Ravi Gupta; Ramana V. Davuluri (BMC Bioinform., 2011)

Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq. - Hao Sun 001; Jiejun Wu; Priyankara Wikramasinghe; Sharmistha Pal; Ravi Gupta; Anirban Bhattacharyya; Francisco J. Agosto-Perez; Louise C. Showe; Tim Hui-Ming Huang; Ramana V. Davuluri (Nucleic Acids Res., 2011)