Vertex characterization of partition polytopes of bipartitions and of planar point sets. - Sharon Aviran; Nissan Lev-Tov; Shmuel Onn; Uriel G. Rothblum (Discret. Appl. Math., 2002)

Momentopes, the Complexity of Vector Partitioning, and Davenport - Schinzel Sequences. - Sharon Aviran; Shmuel Onn (Discret. Comput. Geom., 2002)

Two-dimensional bit-stuffing schemes with multiple transformers. - Sharon Aviran; Paul H. Siegel; Jack K. Wolf (ISIT, 2005)

An improvement to the bit stuffing algorithm. - Sharon Aviran; Paul H. Siegel; Jack K. Wolf (IEEE Trans. Inf. Theory, 2005)

Constrained coding and signal processing for data storage systems. - Sharon Aviran (2006)

Optimal Parsing Trees for Run-Length Coding of Biased Data. - Sharon Aviran; Paul H. Siegel; Jack K. Wolf (IEEE Trans. Inf. Theory, 2008)

Computational Models of HIV-1 Resistance to Gene Therapy Elucidate Therapy Design Principles. - Sharon Aviran; Priya S. Shah; David V. Schaffer; Adam P. Arkin (PLoS Comput. Biol., 2010)

RNA structure characterization from chemical mapping experiments. - Sharon Aviran; Julius B. Lucks; Lior Pachter (Allerton, 2011)

Session TA7b: Sequence and genome analysis (partially invited). - Sharon Aviran (ACSCC, 2012)

Metrics for rapid quality control in RNA structure probing experiments. - Krishna Choudhary; Nathan P. Shih; Fei Deng; Mirko Ledda; Bo Li 015; Sharon Aviran (Bioinform., 2016)

SEQualyzer: interactive tool for quality control and exploratory analysis of high-throughput RNA structural profiling data. - Krishna Choudhary; Luyao Ruan; Fei Deng; Nathan P. Shih; Sharon Aviran (Bioinform., 2017)

FoldAtlas: a repository for genome-wide RNA structure probing data. - Matthew Norris; Chun Kit Kwok; Jitender Cheema; Matthew Hartley; Richard J. Morris; Sharon Aviran; Yiliang Ding (Bioinform., 2017)

Comparative and integrative analysis of RNA structural profiling data: current practices and emerging questions. - Krishna Choudhary; Fei Deng; Sharon Aviran (Quant. Biol., 2017)

Differentiable Folding for Nearest Neighbor Model Optimization. - Ryan K. Krueger; Sharon Aviran; David H. Mathews; Jeffrey Zuber; Max Ward 001 (CoRR, 2025)