SUPFAM - a database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families: implications for structural genomics and function annotation in genomes. - Shashi B. Pandit; Dilip Gosar; S. Abhiman; S. Sujatha; Sayali S. Dixit; Natasha S. Mhatre; Ramanathan Sowdhamini; Narayanaswamy Srinivasan (Nucleic Acids Res., 2002)

Integration of related sequences with protein three-dimensional structural families in an updated version of PALI database. - V. S. Gowri; Shashi B. Pandit; P. S. Karthik; Narayanaswamy Srinivasan; S. Balaji (Nucleic Acids Res., 2003)

SUPFAM: A database of sequence superfamilies of protein domains. - Shashi B. Pandit; Rana Bhadra; V. S. Gowri; S. Balaji; B. Anand; Narayanaswamy Srinivasan (BMC Bioinform., 2004)

Recognition of remotely related structural homologues using sequence profiles of aligned homologous protein structures. - Seema Namboori; Narayanaswamy Srinivasan; Shashi B. Pandit (Silico Biol., 2004)

Identification and analysis of a new family of bacterial serine proteinases. - Shashi B. Pandit; Narayanaswamy Srinivasan (Silico Biol., 2004)

A New Domain Family in the Superfamily of Alkaline Phosphatases. - Rana Bhadra; Narayanaswamy Srinivasan; Shashi B. Pandit (Silico Biol., 2005)

PRODOC: a resource for the comparison of tethered protein domain architectures with in-built information on remotely related domain families. - Oruganty Krishnadev; N. Rekha; Shashi B. Pandit; S. Abhiman; Smita Mohanty; L. S. Swapna; Swanand P. Gore; Narayanaswamy Srinivasan (Nucleic Acids Res., 2005)

Deciphering Binding Site Conformational Variability of Substrate Promiscuous and Specialist Enzymes. - Deeksha Thakur; Paras Verma; Shashi B. Pandit (J. Chem. Inf. Model., 2025)