Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-score. - Shashi Bhushan Pandit; Jeffrey Skolnick (BMC Bioinform., 2008)

PSiFR: an integrated resource for prediction of protein structure and function. - Shashi Bhushan Pandit; Michal Brylinski; Hongyi Zhou; Mu Gao; Adrian K. Arakaki; Jeffrey Skolnick (Bioinform., 2010)

Learning Protein Folding Energy Functions. - Wei Guan 002; Arkadas Ozakin; Alexander G. Gray; Jose Borreguero; Shashi Bhushan Pandit; Anna Jagielska; Liliana Wroblewska; Jeffrey Skolnick (ICDM, 2011)

Enumerating metabolic pathways for the production of heterologous target chemicals in chassis organisms. - Pablo Carbonell; Davide Fichera; Shashi Bhushan Pandit; Jean-Loup Faulon (BMC Syst. Biol., 2012)

XTMS: pathway design in an eXTended metabolic space. - Pablo Carbonell; Pierre Parutto; Joan Hérisson; Shashi Bhushan Pandit; Jean-Loup Faulon (Nucleic Acids Res., 2014)

CSmetaPred: a consensus method for prediction of catalytic residues. - Preeti Choudhary; Shailesh Kumar; Anand Kumar Bachhawat; Shashi Bhushan Pandit (BMC Bioinform., 2017)