Structural changes by sulfoxidation of phenothiazine drugs. - Svein G. Dahl; Peter A. Kollman; Shashidhar N. Rao; U. Chandra Singh (J. Comput. Aided Mol. Des., 1992)

Partially Unified Multiple Property Recursive Partitioning (PUMP-RP) Analyses of Cyclooxygenase (COX) Inhibitors. - Shashidhar N. Rao; Thomas P. Stockfisch (J. Chem. Inf. Comput. Sci., 2003)

PHASE: a new engine for pharmacophore perception, 3D QSAR model development, and 3D database screening: 1. Methodology and preliminary results. - Steven L. Dixon; Alexander M. Smondyrev; Eric H. Knoll; Shashidhar N. Rao; David E. Shaw; Richard A. Friesner (J. Comput. Aided Mol. Des., 2006)

Validation Studies of the Site-Directed Docking Program LibDock. - Shashidhar N. Rao; Martha S. Head; Amit Kulkarni; Judith M. LaLonde (J. Chem. Inf. Model., 2007)

Improving database enrichment through ensemble docking. - Shashidhar N. Rao; Paul C. Sanschagrin; Jeremy R. Greenwood; Matthew P. Repasky; Woody Sherman; Ramy Farid (J. Comput. Aided Mol. Des., 2008)