De novo transcriptome assembly with ABySS. - Inanç Birol; Shaun D. Jackman; Cydney B. Nielsen; Jenny Q. Qian; Richard Varhol; Greg Stazyk; Ryan D. Morin; Yongjun Zhao 002; Martin Hirst; Jacqueline E. Schein; Douglas E. Horsman; Joseph M. Connors; et al. (Bioinform., 2009)

ABySS-Explorer: Visualizing Genome Sequence Assemblies. - Cydney B. Nielsen; Shaun D. Jackman; Inanç Birol; Steven J. M. Jones (IEEE Trans. Vis. Comput. Graph., 2009)

Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data. - Inanç Birol; Anthony Raymond; Shaun D. Jackman; Stephen Pleasance; Robin Coope; Greg A. Taylor; Macaire Man Saint Yuen; Christopher I. Keeling; Dana Brand; Benjamin P. Vandervalk; Heather Kirk; Pawan Pandoh; et al. (Bioinform., 2013)

Spaced seed data structures. - Inanç Birol; Hamid Mohamadi; Anthony Raymond; Karthika Raghavan; Justin Chu; Benjamin P. Vandervalk; Shaun D. Jackman; René L. Warren (BIBM, 2014)

Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph. - Benjamin P. Vandervalk; Shaun D. Jackman; Anthony Raymond; Hamid Mohamadi; Chen Yang; Dean A. Attali; Justin Chu; René L. Warren; Inanç Birol (BIBM, 2014)

BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters. - Justin Chu; Sara Sadeghi; Anthony Raymond; Shaun D. Jackman; Ka Ming Nip; Richard Mar; Hamid Mohamadi; Yaron S. N. Butterfield; A. Gordon Robertson; Inanç Birol (Bioinform., 2014)

KLEAT: Cleavage Site Analysis of Transcriptomes. - Inanç Birol; Anthony Raymond; Readman Chiu; Ka Ming Nip; Shaun D. Jackman; Maayan Kreitzman; T. Roderick Docking; Catherine A. Ennis; A. Gordon Robertson; Aly Karsan (Pacific Symposium on Biocomputing, 2015)

Sealer: a scalable gap-closing application for finishing draft genomes. - Daniel Paulino; René L. Warren; Benjamin P. Vandervalk; Anthony Raymond; Shaun D. Jackman; Inanç Birol (BMC Bioinform., 2015)

On the Representation of De Bruijn Graphs. - Rayan Chikhi; Antoine Limasset; Shaun Jackman; Jared T. Simpson; Paul Medvedev (J. Comput. Biol., 2015)

ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers. - Lauren Coombe; Jessica Zhang; Benjamin P. Vandervalk; Justin Chu; Shaun D. Jackman; Inanç Birol; René L. Warren (BMC Bioinform., 2018)

Tigmint: correcting assembly errors using linked reads from large molecules. - Shaun D. Jackman; Lauren Coombe; Justin Chu; René L. Warren; Benjamin P. Vandervalk; Sarah Yeo; Zhuyi Xue; Hamid Mohamadi; Jörg Bohlmann; Steven J. M. Jones; Inanç Birol (BMC Bioinform., 2018)

ORCA: a comprehensive bioinformatics container environment for education and research. - Shaun D. Jackman; Tatyana Mozgacheva; Susie Chen; Brendan O'Huiginn; Lance Bailey; Inanç Birol; Steven J. M. Jones (Bioinform., 2019)