PSI3: An open-source Ab Initio electronic structure package. - T. Daniel Crawford; C. David Sherrill; Edward F. Valeev; Justin T. Fermann; Rollin A. King; Matthew L. Leininger; Shawn T. Brown; Curtis L. Janssen; Edward T. Seidl; Joseph P. Kenny; Wesley D. Allen (J. Comput. Chem., 2007)

Dynamic Simulation of Community Crime and Crime-Reporting Behavior. - Michael A. Yonas; Jeffrey D. Borrebach; Jessica G. Burke; Shawn T. Brown; Katherine D. Philp; Donald S. Burke; John J. Grefenstette (SBP, 2011)

FRED Navigator: An interactive system for visualizing results from large-scale epidemic simulations. - Jack Paparian; Shawn T. Brown; Donald S. Burke; John J. Grefenstette (eScience, 2012)

A Decision-Theoretic Model of Disease Surveillance and Control and a Prototype Implementation for the Disease Influenza. - Michael M. Wagner 001; Gregory F. Cooper; Fu-Chiang Tsui; Jeremy U. Espino; Hendrik Harkema; John D. Levander; Ricardo Villamarín-Salomón; Nicholas Millett; Shawn T. Brown; Anthony Gallaggher (ICDE Workshops, 2012)

Recent performance improvements to the DFT and TDDFT in GAMESS. - Michael E. Lasinski; Nichols A. Romero; Shawn T. Brown; Jean-Philippe Blaudeau (J. Comput. Chem., 2012)

Apollo: Giving application developers a single point of access to public health models using structured vocabularies and Web services. - Michael M. Wagner 001; John D. Levander; Shawn T. Brown; William R. Hogan; Nicholas Millett; Josh Hanna (AMIA, 2013)

Advanced Techniques for Scientific Programming and Collaborative Development of Open Source Software Packages at the International Centre for Theoretical Physics (ICTP). - Ivan Girotto; Axel Kohlmeyer; David Grellscheid; Shawn T. Brown (CoRR, 2013)

A Novel Representation of Terms Related to Infectious Disease Epidemiology for Epidemic Modeling: The Apollo Structured Vocabulary and Pre-existing Representations. - Mathias Brochhausen; William R. Hogan; John D. Levander; Shawn T. Brown; Nicholas Millett; Josh Hanna; Michael M. Wagner 001 (ICBO, 2014)

The Apollo Structured Vocabulary: an OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation. - William R. Hogan; Michael M. Wagner 001; Mathias Brochhausen; John D. Levander; Shawn T. Brown; Nicholas Millett; Jay DePasse; Josh Hanna (J. Biomed. Semant., 2016)

Weekends as social distancing and their effect on the spread of influenza. - Philip C. Cooley; Sarah M. Bartsch; Shawn T. Brown; William Wheaton; Diane K. Wagener; Bruce Y. Lee (Comput. Math. Organ. Theory, 2016)

Integration of "omics" Data and Phenotypic Data Within a Unified Extensible Multimodal Framework. - Samir Das; Xavier Lecours-Boucher; Christine Rogers; Carolina Makowski; François Chouinard-Decorte; Kathleen Oros Klein; Natacha Beck; Pierre Rioux; Shawn T. Brown; Zia Mohaddes; Cole Zweber; Victoria Foing; et al. (Frontiers Neuroinformatics, 2018)

Performance Evaluation of Big Data Processing Strategies for Neuroimaging. - Valérie Hayot-Sasson; Shawn T. Brown; Tristan Glatard (CCGRID, 2019)

Comparing Perturbation Models for Evaluating Stability of Post-Processing Pipelines in Neuroimaging. - Gregory Kiar; Pablo de Oliveira Castro; Pierre Rioux; Eric Petit 002; Shawn T. Brown; Alan C. Evans; Tristan Glatard (CoRR, 2019)

Performance benefits of Intel(R) OptaneTM DC persistent memory for the parallel processing of large neuroimaging data. - Valérie Hayot-Sasson; Shawn T. Brown; Tristan Glatard (CoRR, 2019)

A Serverless Tool for Platform Agnostic Computational Experiment Management. - Gregory Kiar; Shawn T. Brown; Tristan Glatard; Alan C. Evans (Frontiers Neuroinformatics, 2019)

Performance benefits of Intel® Optane™ DC persistent memory for the parallel processing of large neuroimaging data. - Valérie Hayot-Sasson; Shawn T. Brown; Tristan Glatard (CCGRID, 2020)

Deploying large fixed file datasets with SquashFS and Singularity. - Pierre Rioux; Gregory Kiar; Alexandre Hutton; Alan C. Evans; Shawn T. Brown (PEARC, 2020)

A Quantitative EEG Toolbox for the MNI Neuroinformatics Ecosystem: Normative SPM of EEG Source Spectra. - Jorge Bosch-Bayard; Eduardo Aubert-Vázquez; Shawn T. Brown; Christine Rogers; Gregory Kiar; Tristan Glatard; Lalet Scaria; Lídice Galán-García; Maria L. Bringas-Vega; Trinidad Virués-Alba; Armin Taheri; Samir Das; et al. (Frontiers Neuroinformatics, 2020)

Comparing perturbation models for evaluating stability of neuroimaging pipelines. - Gregory Kiar; Pablo de Oliveira Castro; Pierre Rioux; Eric Petit 002; Shawn T. Brown; Alan C. Evans; Tristan Glatard (Int. J. High Perform. Comput. Appl., 2020)

Bridges-2: A Platform for Rapidly-Evolving and Data Intensive Research. - Shawn T. Brown; Paola Buitrago; Edward Hanna; Sergiu Sanielevici; Robin M. Scibek; Nicholas A. Nystrom (PEARC, 2021)

Creating a Discipline-specific Commons for Infectious Disease Epidemiology. - Michael M. Wagner 001; William R. Hogan; John D. Levander; Adam Darr; Matt Diller; Max Sibilla; Alexander T. Loiacono; Terence Sperringer Jr.; Shawn T. Brown (CoRR, 2023)