SVNN: an efficient PacBio-specific pipeline for structural variations calling using neural networks. - Shaya Akbarinejad; Mostafa Hadadian Nejad Yousefi; Maziar Goudarzi (BMC Bioinform., 2021)

TumorDecon: A digital cytometry software. - Rachel A. Aronow; Shaya Akbarinejad; Trang Le; Sumeyye Su; Leili Shahriyari (SoftwareX, 2022)