Rapid development of nucleic acid diagnostics. - J. Patrick Fitch; Shea N. Gardner; Thomas A. Kuczmarski; Stefan Kurtz; Rich Myers; Linda L. Ott; Thomas R. Slezak; Elizabeth A. Vitalis; Adam T. Zemla; Paula M. McCready (Proc. IEEE, 2002)

Comparative Genomics Tools Applied to Bioterrorism Defence. - Tom Slezak; Tom Kuczmarski; Linda L. Ott; Clinton Torres; Dan Medeiros; Jason Smith 002; Brian Truitt; Nisha Mulakken; Marisa Lam; Elizabeth A. Vitalis; Adam T. Zemla; Carol L. Ecale Zhou; et al. (Briefings Bioinform., 2003)

LAVA: An Open-Source Approach To Designing LAMP (Loop-Mediated Isothermal Amplification) DNA Signatures. - Clinton Torres; Elizabeth A. Vitalis; Brian R. Baker; Shea N. Gardner; Marisa W. Torres; John M. Dzenitis (BMC Bioinform., 2011)

Identification of SNPs associated with variola virus virulence. - Anne Gatewood Hoen; Shea N. Gardner; Jason H. Moore (BioData Min., 2013)

Scalable metagenomic taxonomy classification using a reference genome database. - Sasha Ames; David A. Hysom; Shea N. Gardner; G. Scott Lloyd; Maya B. Gokhale; Jonathan E. Allen (Bioinform., 2013)

Multiplex Degenerate Primer Design for Targeted Whole Genome Amplification of Many Viral Genomes. - Shea N. Gardner; Crystal J. Jaing; Maher M. Elsheikh; José Peña; David A. Hysom; Monica K. Borucki (Adv. Bioinformatics, 2014)

Simulate_PCR for amplicon prediction and annotation from multiplex, degenerate primers and probes. - Shea N. Gardner; Tom Slezak (BMC Bioinform., 2014)

kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome. - Shea N. Gardner; Tom Slezak; Barry G. Hall (Bioinform., 2015)