Identification of differentially expressed gene sets using the Generalized Berk-Jones statistic. - Sheila M. Gaynor; Ryan Sun; Xihong Lin; John Quackenbush (Bioinform., 2019)

STAAR workflow: a cloud-based workflow for scalable and reproducible rare variant analysis. - Sheila M. Gaynor; Kenneth E. Westerman; Lea L. Ackovic; Xihao Li; Zilin Li; Alisa Manning; Anthony A. Philippakis; Xihong Lin (Bioinform., 2022)

COVID-19 Spread Mapper: a multi-resolution, unified framework and open-source tool. - Andy Shi; Sheila M. Gaynor; Rounak Dey; Haoyu Zhang; Corbin Quick; Xihong Lin (Bioinform., 2022)

A statistical framework for multi-trait rare variant analysis in large-scale whole-genome sequencing studies. - Xihao Li; Han Chen; Margaret Sunitha Selvaraj; Eric Van Buren; Hufeng Zhou; Yuxuan Wang 008; Ryan Sun; Zachary R. McCaw; Zhi Yu; Min-Zhi Jiang; Daniel DiCorpo; Sheila M. Gaynor; et al. (Nat. Comput. Sci., 2025)