Part-of-Speech Tagging using Virtual Evidence and Negative Training. - Sheila M. Reynolds; Jeff A. Bilmes (HLT/EMNLP, 2005)

Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification. - Aaron A. Klammer; Sheila M. Reynolds; Jeff A. Bilmes; Michael J. MacCoss; William Stafford Noble (ISMB, 2008)

Transmembrane Topology and Signal Peptide Prediction Using Dynamic Bayesian Networks. - Sheila M. Reynolds; Lukas Käll; Michael Riffle; Jeff A. Bilmes; William Stafford Noble (PLoS Comput. Biol., 2008)

On the Relationship between DNA Periodicity and Local Chromatin Structure. - Sheila M. Reynolds; Jeff A. Bilmes; William Stafford Noble (RECOMB, 2009)

Predicting Nucleosome Positioning Using Multiple Evidence Tracks. - Sheila M. Reynolds; Zhiping Weng; Jeff A. Bilmes; William Stafford Noble (RECOMB, 2010)

Learning a Weighted Sequence Model of the Nucleosome Core and Linker Yields More Accurate Predictions in Saccharomyces cerevisiae and Homo sapiens. - Sheila M. Reynolds; Jeff A. Bilmes; William Stafford Noble (PLoS Comput. Biol., 2010)