SiMMap: a web server for inferring site-moiety map to recognize interaction preferences between protein pockets and compound moieties. - Yen-Fu Chen; Kai-Cheng Hsu; Shen-Rong Lin; Wen-Ching Wang; Yu-Chi Huang; Jinn-Moon Yang (Nucleic Acids Res., 2010)

iGEMDOCK: a graphical environment of enhancing GEMDOCK using pharmacological interactions and post-screening analysis. - Kai-Cheng Hsu; Yen-Fu Chen; Shen-Rong Lin; Jinn-Moon Yang (BMC Bioinform., 2011)

Moiety-Linkage Map Reveals Selective Nonbisphosphonate Inhibitors of Human Geranylgeranyl Diphosphate Synthase. - Shih-Hsun Chen; Sheng-Wei Lin; Shen-Rong Lin; Po-Huang Liang; Jinn-Moon Yang (J. Chem. Inf. Model., 2013)