miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes. - Paul Wei-Che Hsu; Hsien-Da Huang; Sheng-Da Hsu; Li-Zen Lin; Ann-Ping Tsou; Ching-Ping Tseng; Peter F. Stadler; Stefan Washietl; Ivo L. Hofacker (Nucleic Acids Res., 2006)

ViTa: prediction of host microRNAs targets on viruses. - Paul Wei-Che Hsu; Li-Zen Lin; Sheng-Da Hsu; Justin Bo-Kai Hsu; Hsien-Da Huang (Nucleic Acids Res., 2007)

miRNAMap 2.0: genomic maps of microRNAs in metazoan genomes. - Sheng-Da Hsu; Chia-Huei Chu; Ann-Ping Tsou; Shu-Jen Chen; Hua-Chien Chen; Paul Wei-Che Hsu; Yung-Hao Wong; Yi-Hsuan Chen; Gian-Hung Chen; Hsien-Da Huang (Nucleic Acids Res., 2008)

miRTar: an integrated system for identifying miRNA-target interactions in Human. - Justin Bo-Kai Hsu; Chih-Min Chiu; Sheng-Da Hsu; Wei-Yun Huang; Chia-Hung Chien; Tzong-Yi Lee; Hsien-Da Huang (BMC Bioinform., 2011)

miRTarBase: a database curates experimentally validated microRNA-target interactions. - Sheng-Da Hsu; Feng-Mao Lin; Wei-Yun Wu; Chao Liang; Wei-Chih Huang; Wen-Ling Chan; Wen-Ting Tsai; Goun-Zhou Chen; Chia-Jung Lee; Chih-Min Chiu; Chia-Hung Chien; Ming-Chia Wu; et al. (Nucleic Acids Res., 2011)

A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing. - Chih-Hung Chou; Feng-Mao Lin; Min-Te Chou; Sheng-Da Hsu; Tzu-Hao Chang; Shun-Long Weng; Sirjana Shrestha; Chiung-Chih Hsiao; Jui-Hung Hung; Hsien-Da Huang (BMC Genom., 2013)

miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions. - Sheng-Da Hsu; Yu-Ting Tseng; Sirjana Shrestha; Yu-Ling Lin; Anas Khaleel; Chih-Hung Chou; Chao-Fang Chu; Hsi-Yuan Huang; Ching-Min Lin; Shu-Yi Ho; Ting-Yan Jian; Feng-Mao Lin; et al. (Nucleic Acids Res., 2014)

Integrated analyses to reconstruct microRNA-mediated regulatory networks in mouse liver using high-throughput profiling. - Sheng-Da Hsu; Hsi-Yuan Huang; Chih-Hung Chou; Yi-Ming Sun; Ming-Ta Hsu; Ann-Ping Tsou (BMC Genom., 2015)

MethHC: a database of DNA methylation and gene expression in human cancer. - Wei-Yun Huang; Sheng-Da Hsu; Hsi-Yuan Huang; Yi-Ming Sun; Chih-Hung Chou; Shun-Long Weng; Hsien-Da Huang (Nucleic Acids Res., 2015)

Transcriptome sequencing based annotation and homologous evidence based scaffolding of Anguilla japonica draft genome. - Yu-Chen Liu; Sheng-Da Hsu; Chih-Hung Chou; Wei-Yun Huang; Yu-Hung Chen; Chia-Yu Liu; Guan-Jay Lyu; Shao-Zhen Huang; Sergey Aganezov Jr.; Max A. Alekseyev; Chung-Der Hsiao; Hsien-Da Huang (BMC Genom., 2016)

miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database. - Chih-Hung Chou; Nai-Wen Chang 001; Sirjana Shrestha; Sheng-Da Hsu; Yu-Ling Lin; Wei-Hsiang Lee; Chi-Dung Yang; Hsiao-Chin Hong; Ting-Yen Wei; Siang-Jyun Tu; Tzi-Ren Tsai; Shu-Yi Ho; et al. (Nucleic Acids Res., 2016)

CircNet: a database of circular RNAs derived from transcriptome sequencing data. - Yu-Chen Liu; Jianrong Li; Chuan-Hu Sun; Erik Andrews; Rou-Fang Chao; Feng-Mao Lin; Shun-Long Weng; Sheng-Da Hsu; Chieh-Chen Huang; Chao Cheng; Chun-Chi Liu; Hsien-Da Huang (Nucleic Acids Res., 2016)

The aquatic animals' transcriptome resource for comparative functional analysis. - Chih-Hung Chou; Hsi-Yuan Huang; Wei-Chih Huang 002; Sheng-Da Hsu; Chung-Der Hsiao; Chia-Yu Liu; Yu-Hung Chen; Yu-Chen Liu; Wei-Yun Huang; Meng-Lin Lee; Yi-Chang Chen; Hsien-Da Huang (BMC Genom., 2018)