The Fudan-UIUC Participation in the BioASQ Challenge Task 2a: The Antinomyra system. - Ke Liu 002; Junqiu Wu; Shengwen Peng; Chengxiang Zhai; Shanfeng Zhu (CLEF (Working Notes), 2014)

The Fudan Participation in the 2015 BioASQ Challenge: Large-scale Biomedical Semantic Indexing and Question Answering. - Shengwen Peng; Ronghui You; Zhikai Xie; Beichen Wang; Yanchun Zhang; Shanfeng Zhu (CLEF (Working Notes), 2015)

FDUMedSearch at TREC 2015 Clinical Decision Support Track. - Ronghui You; Shengwen Peng; Shanfeng Zhu; Yuanjie Zhou (TREC, 2015)

MeSHLabeler: improving the accuracy of large-scale MeSH indexing by integrating diverse evidence. - Ke Liu 002; Shengwen Peng; Junqiu Wu; ChengXiang Zhai; Hiroshi Mamitsuka; Shanfeng Zhu (Bioinform., 2015)

MeSHSim: An R/Bioconductor package for measuring semantic similarity over MeSH headings and MEDLINE documents. - Jing Zhou; Yuxuan Shui; Shengwen Peng; Xuhui Li 001; Hiroshi Mamitsuka; Shanfeng Zhu (J. Bioinform. Comput. Biol., 2015)

DeepMeSH: deep semantic representation for improving large-scale MeSH indexing. - Shengwen Peng; Ronghui You; Hongning Wang; Chengxiang Zhai; Hiroshi Mamitsuka; Shanfeng Zhu (Bioinform., 2016)

Prediction of amino acid side chain conformation using a deep neural network. - Ke Liu; Xiangyan Sun; Jun Ma; Zhenyu Zhou; Qilin Dong; Shengwen Peng; Junqiu Wu; Suocheng Tan; Günter Blobel; Jie Fan 006 (CoRR, 2017)