A Geometric Representation of Protein Sequences. - Shengyin Gu; Olivier Poch; Bernd Hamann; Patrice Koehl (BIBM, 2007)

TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities. - Shengyin Gu; Iain Anderson; Victor Kunin; Michael J. Cipriano; Simon Minovitsky; Gunther H. Weber; Nina Amenta; Bernd Hamann; Inna Dubchak (Bioinform., 2007)

Symmetry Restoration by Stretching. - Michael M. Kazhdan; Nina Amenta; Shengyin Gu; David F. Wiley; Bernd Hamann (CCCG, 2009)

Automatic generation of research trails in web history. - Elin Rønby Pedersen; Karl Gyllstrom; Shengyin Gu; Peter Jin Hong (IUI, 2010)

Sampling the conformation of protein surface residues for flexible protein docking. - Patricia Francis-Lyon; Shengyin Gu; Joel Hass; Nina Amenta; Patrice Koehl (BMC Bioinform., 2010)