RiboSubstrates: a web application addressing the cleavage specificities of ribozymes in designated genomes. - Jean-François Lucier; Lucien Junior Bergeron; Francis P. Brière; Rodney Ouellette; Sherif Abou Elela; Jean-Pierre Perreault (BMC Bioinform., 2006)

CoCo: RNA-seq read assignment correction for nested genes and multimapped reads. - Gabrielle Deschamps-Francoeur; Vincent Boivin; Sherif Abou Elela; Michelle S. Scott (Bioinform., 2019)

snoDB: an interactive database of human snoRNA sequences, abundance and interactions. - Philia Bouchard-Bourelle; Clément Desjardins-Henri; Darren Mathurin-St-Pierre; Gabrielle Deschamps-Francoeur; Étienne Fafard-Couture; Jean-Michel Garant; Sherif Abou Elela; Michelle S. Scott (Nucleic Acids Res., 2020)

SAPFIR: A webserver for the identification of alternative protein features. - Delong Zhou; Yvan Tran; Sherif Abou Elela; Michelle S. Scott (BMC Bioinform., 2022)

snoDB 2.0: an enhanced interactive database, specializing in human snoRNAs. - Danny Bergeron; Hermes Paraqindes; Étienne Fafard-Couture; Gabrielle Deschamps-Francoeur; Laurence Faucher-Giguère; Philia Bouchard-Bourelle; Sherif Abou Elela; Frédéric Catez; Virginie Marcel; Michelle S. Scott (Nucleic Acids Res., 2023)