Inferring the Regulatory Interaction Models of transcription Factors in transcriptional Regulatory Networks. - Sherine Awad; Nicholas Panchy; See-Kiong Ng; Jin Chen 012 (J. Bioinform. Comput. Biol., 2012)

Inferring transcription factor collaborations in gene regulatory networks. - Sherine Awad; Jin Chen (BMC Syst. Biol., 2014)

The khmer software package: enabling efficient nucleotide sequence analysis. - Michael R. Crusoe; Hussien F. Alameldin; Sherine Awad; Elmar Boucher; Adam Caldwell; Reed Cartwright; Amanda Charbonneau; Bede Constantinides; Greg Edvenson; Scott A. Fay; Jacob Fenton; Thomas Fenzl; et al. (F1000Research, 2015)

Crossing the streams: a framework for streaming analysis of short DNA sequencing reads. - Qingpeng Zhang; Sherine Awad; C. Titus Brown (PeerJ Prepr., 2015)

Porting the Variant Calling Pipeline for NGS data in cloud-HPC environment. - Alberto Mulone; Sherine Awad; Davide Chiarugi; Marco Aldinucci (COMPSAC, 2023)