miRTarBase 2020: updates to the experimentally validated microRNA?target interaction database. - Hsi-Yuan Huang; Yang-Chi-Dung Lin; Jing Li; Kai-Yao Huang; Sirjana Shrestha; Hsiao-Chin Hong; Yun Tang; Yigang Chen 001; Chen-Nan Jin; Yuan Yu; Jia-Tong Xu; Yue-Ming Li; et al. (Nucleic Acids Res., 2020)

CircNet 2.0: an updated database for exploring circular RNA regulatory networks in cancers. - Yigang Chen 001; Lantian Yao; Yun Tang; Jhih-Hua Jhong; Jingting Wan; Jingyue Chang; Shi-Dong Cui; Yijun Luo; Xiao-Xuan Cai; Wenshuo Li; Qi Chen; Hsi-Yuan Huang; et al. (Nucleic Acids Res., 2022)

miRTarBase update 2022: an informative resource for experimentally validated miRNA-target interactions. - Hsi-Yuan Huang; Yang-Chi-Dung Lin; Shi-Dong Cui; Yixian Huang; Yun Tang; Jia-Tong Xu; Jiayang Bao; Yulin Li; Jia Wen; Hua-Li Zuo; Weijuan Wang; Jing Li; et al. (Nucleic Acids Res., 2022)

Quantitative model for genome-wide cyclic AMP receptor protein binding site identification and characteristic analysis. - Yigang Chen 001; Yang-Chi-Dung Lin; Yijun Luo; Xiao-Xuan Cai; Peng Qiu; Shi-Dong Cui; Zhe Wang; Hsi-Yuan Huang; Hsien-Da Huang (Briefings Bioinform., 2023)

SCOPE-DTI: Semi-Inductive Dataset Construction and Framework Optimization for Practical Usability Enhancement in Deep Learning-Based Drug Target Interaction Prediction. - Yigang Chen 001; Xiang Ji; Ziyue Zhang; Yuming Zhou; Yang-Chi-Dung Lin; Hsi-Yuan Huang; Tao Zhang; Yi Lai; Ke Chen; Chang Su; Xingqiao Lin; Zihao Zhu; et al. (CoRR, 2025)