LibCoopt: A library for combinatorial optimization on partial permutation matrices. - Zhi-Yong Liu 001; Jing-Jing Wang; Xu Yang 004; Shi-Hao Feng (Neurocomputing, 2017)

CoCoPRED: coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks. - Shi-Hao Feng; Chun-Qiu Xia; Hong-Bin Shen (Bioinform., 2022)

Fast protein structure comparison through effective representation learning with contrastive graph neural networks. - Chun-Qiu Xia; Shi-Hao Feng; Ying Xia; Xiaoyong Pan; Hong-Bin Shen (PLoS Comput. Biol., 2022)

Ab-Initio Membrane Protein Amphipathic Helix Structure Prediction Using Deep Neural Networks. - Shi-Hao Feng; Chun-Qiu Xia; Pei-Dong Zhang; Hong-Bin Shen (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Leveraging scaffold information to predict protein-ligand binding affinity with an empirical graph neural network. - Chun-Qiu Xia; Shi-Hao Feng; Ying Xia; Xiaoyong Pan; Hong-Bin Shen (Briefings Bioinform., 2023)