Analytical modeling and deep learning approaches to estimating RNA SHAPE reactivity from 3D structure. - Travis Hurst; Yuanzhe Zhou; Shi-Jie Chen (Commun. Inf. Syst., 2019)

A Bayes-inspired theory for optimally building an efficient coarse-grained folding force field. - Travis Hurst; Dong Zhang; Yuanzhe Zhou; Shi-Jie Chen (Commun. Inf. Syst., 2021)

Vfold-Pipeline: a web server for RNA 3D structure prediction from sequences. - Jun Li; Sicheng Zhang; Dong Zhang; Shi-Jie Chen (Bioinform., 2022)

Research and application of UAV image recognition algorithm based on Soft-CBAM-YOLOV5. - Shi-Jie Chen; Shang Kang Lin; Bo-Yuan Liu; Zhen Zhang (ICCDA, 2023)

smFRET-assisted RNA structure prediction. - Jun Li; Nils G. Walter; Shi-Jie Chen (Commun. Inf. Syst., 2024)