Comparative genomics approach to detecting split-coding regions in a low-coverage genome: lessons from the chimaera Callorhinchus milii (Holocephali, Chondrichthyes). - Christophe Dessimoz; Stefan Zoller; Tereza Manousaki; Huan Qiu; Axel Meyer; Shigehiro Kuraku (Briefings Bioinform., 2011)

Hox Gene Clusters of Early Vertebrates: Do They Serve as Reliable Markers for Genome Evolution? - Shigehiro Kuraku (Genom. Proteom. Bioinform., 2011)

aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity. - Shigehiro Kuraku; Christian M. Zmasek; Osamu Nishimura; Kazutaka Katoh (Nucleic Acids Res., 2013)

gVolante for standardizing completeness assessment of genome and transcriptome assemblies. - Osamu Nishimura; Yuichiro Hara; Shigehiro Kuraku (Bioinform., 2017)